C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000172996 Smarca4-002 ENSMUSG00000032187 10090 + 9:21635767-21686228 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryTestisENSMUST00000172996
Transcript ID Ovary Testis
ENSMUST00000172996 10.528±0.00 9.628±5.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002S7 CIL_0002S7_0002 CGP 9:21592722-21704230
CIL_00058P CIL_00058P_0004 CGP 9:21616169-21749916

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000115110 smarca4-201 protein_coding Danio_rerio 0 2388
ENSDART00000134514 smarca4-001 protein_coding Danio_rerio 0 2388
ENSDART00000041412 smarca2-001 protein_coding Danio_rerio 0 1423
ENST00000344626 SMARCA4-001 protein_coding Homo_sapiens 0 4822
ENST00000413806 SMARCA4-201 protein_coding Homo_sapiens 0 2748
ENST00000429416 SMARCA4-007 protein_coding Homo_sapiens 0 4822
ENST00000444061 SMARCA4-003 protein_coding Homo_sapiens 0 4006
ENST00000450717 SMARCA4-202 protein_coding Homo_sapiens 0 4573
ENST00000538456 SMARCA4-006 processed_transcript Homo_sapiens 0 316
ENST00000541122 SMARCA4-005 protein_coding Homo_sapiens 0 4006
ENST00000585799 SMARCA4-011 retained_intron Homo_sapiens 0 1417
ENST00000586892 SMARCA4-013 retained_intron Homo_sapiens 0 510
ENST00000589677 SMARCA4-004 protein_coding Homo_sapiens 0 4006
ENST00000590574 SMARCA4-002 protein_coding Homo_sapiens 0 4006
ENST00000591545 SMARCA4-009 retained_intron Homo_sapiens 0 3714
ENST00000591595 SMARCA4-010 retained_intron Homo_sapiens 0 1528
ENST00000592158 SMARCA4-018 protein_coding Homo_sapiens 0 433
ENST00000592604 SMARCA4-008 retained_intron Homo_sapiens 0 1868

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