C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000592604 SMARCA4-008 ENSG00000127616 9606 + 19:11012762-11061989 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonKidneyLiverLungPlacentaENST00000592604
Transcript ID Adipose Breast Colon Kidney Liver Lung Placenta
ENST00000592604 9.927±0.00 3.231±0.90 2.967±0.00 8.037±0.00 3.223±0.00 5.402±3.29 5.216±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002S7 CIL_0002S7_0001 CGP 19:10928733-11065395
CIL_00058P CIL_00058P_0003 CGP 19:10961001-11133816

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000098948 Smarca4-201 protein_coding Mus_musculus 0 3369
ENSMUST00000034707 Smarca4-001 protein_coding Mus_musculus 0 3312
ENSMUST00000174008 Smarca4-003 protein_coding Mus_musculus 0 3291
ENSDART00000115110 smarca4-201 protein_coding Danio_rerio 0 2004
ENSDART00000134514 smarca4-001 protein_coding Danio_rerio 0 2004
ENSMUST00000172996 Smarca4-002 protein_coding Mus_musculus 0 1868
ENSDART00000003698 SMARCA4 (1 of 2)-201 protein_coding Danio_rerio 0 1646
ENSMUST00000099537 Smarca2-002 nonsense_mediated_decay Mus_musculus 0 1330
ENSMUST00000176030 Smarca2-003 protein_coding Mus_musculus 0 1330
ENSMUST00000025862 Smarca2-001 protein_coding Mus_musculus 0 1330
ENSMUST00000175935 Smarca2-004 processed_transcript Mus_musculus 0 1081
ENSMUST00000176769 Smarca2-005 protein_coding Mus_musculus 0 848

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