C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: glutamate receptor, ionotropic, AMPA 1b
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000123713 gria1b-003 ENSDARG00000032714 7955 - 21:25545819-25643930 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartKidneyMuscleENSDART00000123713
Transcript ID Heart Kidney Muscle
ENSDART00000123713 0.061±0.02 0.257±0.10 0.141±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004970 IEA ionotropic glutamate receptor activity
GO:0005215 IEA transporter activity
GO:0005234 IEA extracellular-glutamate-gated ion channel activity
GO:0006810 IEA transport
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000063508 Gria4-202 protein_coding Mus_musculus 0 540
ENSMUST00000075316 Gria2-201 protein_coding Mus_musculus 0 298
ENSMUST00000107745 Gria2-202 protein_coding Mus_musculus 0 625
ENST00000282499 GRIA4-201 protein_coding Homo_sapiens 0 529
ENST00000296526 GRIA2-001 protein_coding Homo_sapiens 0 592
ENST00000323661 GRIA2-006 nonsense_mediated_decay Homo_sapiens 5e-30 137
ENST00000393815 GRIA2-004 protein_coding Homo_sapiens 0 592
ENST00000471736 GRIA2-003 retained_intron Homo_sapiens 0 592
ENST00000507898 GRIA2-005 protein_coding Homo_sapiens 0 592
ENST00000510854 GRIA2-012 protein_coding Homo_sapiens 0 375
ENST00000525942 GRIA4-007 nonsense_mediated_decay Homo_sapiens 0 198
ENST00000530497 GRIA4-005 protein_coding Homo_sapiens 0 529

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