C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: glutamate receptor, ionotropic, AMPA 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000510854 GRIA2-012 ENSG00000120251 9606 + 4:157341429-157363164 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastTestisENST00000510854
Transcript ID Adipose Adrenal Breast Testis
ENST00000510854 0.073±0.00 0.102±0.00 0.119±0.00 0.656±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006DX CIL_0006DX_0002 CGP 4:157076057-157366075
CIL_00007X CIL_00007X_0002 CGP 4:157204182-158173318

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004970 IEA ionotropic glutamate receptor activity
GO:0005234 IEA extracellular-glutamate-gated ion channel activity
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000107745 Gria2-202 protein_coding Mus_musculus 0 1055
ENSMUST00000075316 Gria2-201 protein_coding Mus_musculus 0 878
ENSDART00000064617 gria2b-001 protein_coding Danio_rerio 0 710
ENSDART00000134602 gria2b-003 processed_transcript Danio_rerio 0 505
ENSMUST00000076349 Gria3-001 protein_coding Mus_musculus 0 486
ENSMUST00000063508 Gria4-202 protein_coding Mus_musculus 0 477
ENSDART00000077805 gria2a-002 protein_coding Danio_rerio 0 453
ENSMUST00000151045 Gria1-006 protein_coding Mus_musculus 0 429
ENSMUST00000036315 Gria1-004 protein_coding Mus_musculus 0 429
ENSDART00000123713 gria1b-003 protein_coding Danio_rerio 0 375
ENSMUST00000139965 Gria3-002 nonsense_mediated_decay Mus_musculus 0 289

Loading