C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glutamate receptor, ionotropic, AMPA 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000530497 GRIA4-005 ENSG00000152578 9606 + 11:105610998-105982089 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonKidneyMuscleOvaryPlacentaENST00000530497
Transcript ID Adrenal Brain Breast Colon Kidney Muscle Ovary Placenta
ENST00000530497 0.142±0.00 3.475±0.00 0.237±0.03 0.202±0.00 0.016±0.00 0.002±0.00 0.007±0.00 0.085±0.05

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004970 ISS:IEA ionotropic glutamate receptor activity
GO:0004971 IDA alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity
GO:0005234 IBA:IEA extracellular-glutamate-gated ion channel activity
GO:0005886 TAS plasma membrane
GO:0006810 TAS transport
GO:0007215 TAS glutamate receptor signaling pathway
GO:0007268 TAS synaptic transmission
GO:0016020 IEA membrane
GO:0030054 IEA cell junction
GO:0030425 IBA dendrite
GO:0030666 TAS endocytic vesicle membrane
GO:0031982 IDA vesicle
GO:0032281 ISS alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex
GO:0034220 IEA ion transmembrane transport
GO:0035235 IEA ionotropic glutamate receptor signaling pathway
GO:0035249 IBA synaptic transmission, glutamatergic
GO:0045211 IBA postsynaptic membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000063508 Gria4-202 protein_coding Mus_musculus 0 4447
ENSMUST00000027020 Gria4-201 protein_coding Mus_musculus 0 4292
ENSMUST00000163309 Gria4-203 protein_coding Mus_musculus 0 1657
ENSMUST00000107745 Gria2-202 protein_coding Mus_musculus 0 1114
ENSMUST00000076349 Gria3-001 protein_coding Mus_musculus 0 1016
ENSMUST00000165288 Gria3-201 protein_coding Mus_musculus 0 917
ENSMUST00000115103 Gria3-004 protein_coding Mus_musculus 0 917
ENSDART00000064617 gria2b-001 protein_coding Danio_rerio 0 889
ENSDART00000043180 gria3b-001 protein_coding Danio_rerio 0 885
ENSMUST00000139965 Gria3-002 nonsense_mediated_decay Mus_musculus 0 833
ENSMUST00000156721 Gria3-003 retained_intron Mus_musculus 0 767
ENSDART00000123713 gria1b-003 protein_coding Danio_rerio 0 529
ENSDART00000077805 gria2a-002 protein_coding Danio_rerio 0 431
ENSMUST00000148212 Gria3-006 retained_intron Mus_musculus 0 407
ENSMUST00000128197 Gria3-005 retained_intron Mus_musculus 0 407
ENSDART00000134602 gria2b-003 processed_transcript Danio_rerio 0 279
ENSMUST00000126843 Gria3-008 retained_intron Mus_musculus 0 255

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