C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glutamate receptor, ionotropic, AMPA 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000471736 GRIA2-003 ENSG00000120251 9606 + 4:157220724-157364287 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartLiverOvaryTestisENST00000471736
Transcript ID Brain Breast Heart Liver Ovary Testis
ENST00000471736 12.508±0.00 0.038±0.00 0.014±0.00 0.307±0.00 0.029±0.00 0.076±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006DX CIL_0006DX_0002 CGP 4:157076057-157366075
CIL_00007X CIL_00007X_0002 CGP 4:157204182-158173318

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000107745 Gria2-202 protein_coding Mus_musculus 0 3203
ENSMUST00000075316 Gria2-201 protein_coding Mus_musculus 0 3025
ENSDART00000064617 gria2b-001 protein_coding Danio_rerio 0 1373
ENSMUST00000063508 Gria4-202 protein_coding Mus_musculus 0 1027
ENSMUST00000076349 Gria3-001 protein_coding Mus_musculus 0 1026
ENSDART00000074671 gria2b-002 protein_coding Danio_rerio 0 872
ENSMUST00000151045 Gria1-006 protein_coding Mus_musculus 0 859
ENSMUST00000036315 Gria1-004 protein_coding Mus_musculus 0 859
ENSDART00000123713 gria1b-003 protein_coding Danio_rerio 0 592
ENSDART00000134602 gria2b-003 processed_transcript Danio_rerio 0 490
ENSDART00000077805 gria2a-002 protein_coding Danio_rerio 0 477
ENSMUST00000139965 Gria3-002 nonsense_mediated_decay Mus_musculus 0 289

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