C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actinin, alpha 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000252699 ACTN4-001 ENSG00000130402 9606 + 19:38647670-38731583 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverMuscleOvaryTestisENST00000252699
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Testis
ENST00000252699 55.833±0.00 31.067±0.00 3.745±0.00 8.997±0.00 19.343±13.93 19.435±13.36 7.669±0.00 33.503±0.00 10.326±0.00 6.824±0.00 23.425±18.60 22.492±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001666 IEA response to hypoxia
GO:0001725 IEA stress fiber
GO:0001882 IDA nucleoside binding
GO:0002576 TAS platelet degranulation
GO:0003779 TAS actin binding
GO:0005178 TAS integrin binding
GO:0005509 IEA calcium ion binding
GO:0005515 IPI:IEA protein binding
GO:0005576 TAS extracellular region
GO:0005615 IDA extracellular space
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005911 IEA cell-cell junction
GO:0005925 IDA focal adhesion
GO:0007596 TAS blood coagulation
GO:0015031 IEA protein transport
GO:0030018 IEA Z disc
GO:0030168 TAS platelet activation
GO:0030529 IDA ribonucleoprotein complex
GO:0030863 IEA cortical cytoskeleton
GO:0031093 TAS platelet alpha granule lumen
GO:0031143 TAS pseudopodium
GO:0032403 IEA protein complex binding
GO:0032417 NAS positive regulation of sodium:proton antiporter activity
GO:0042803 TAS protein homodimerization activity
GO:0042981 NAS regulation of apoptotic process
GO:0043005 IEA neuron projection
GO:0043234 IDA protein complex
GO:0044822 IDA poly(A) RNA binding
GO:0047485 IEA protein N-terminus binding
GO:0048471 IDA perinuclear region of cytoplasm
GO:0048549 IEA positive regulation of pinocytosis
GO:0051015 IDA actin filament binding
GO:0051017 IEA actin filament bundle assembly
GO:0051271 IEA negative regulation of cellular component movement
GO:0051272 IMP positive regulation of cellular component movement
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000068045 Actn4-001 protein_coding Mus_musculus 0 3794
ENSMUST00000144909 Actn4-002 processed_transcript Mus_musculus 0 2621
ENSMUST00000021554 Actn1-201 protein_coding Mus_musculus 0 2200
ENSMUST00000167327 Actn1-202 protein_coding Mus_musculus 0 2085
ENSMUST00000127210 Actn4-005 protein_coding Mus_musculus 0 1965
ENSDART00000100217 actn1-201 protein_coding Danio_rerio 0 1698
ENSDART00000133740 actn1-002 nonsense_mediated_decay Danio_rerio 0 1698
ENSDART00000140243 actn1-001 protein_coding Danio_rerio 0 1698
ENSDART00000123678 actn1-202 protein_coding Danio_rerio 0 1589
ENSMUST00000168193 Actn2-201 protein_coding Mus_musculus 0 1531
ENSMUST00000064204 Actn2-001 protein_coding Mus_musculus 0 1531
ENSDART00000001649 actn3b-001 protein_coding Danio_rerio 0 1437
ENSMUST00000006626 Actn3-001 protein_coding Mus_musculus 0 1308
ENSMUST00000140622 Actn4-004 protein_coding Mus_musculus 0 924
ENSDART00000032887 ACTN4 (1 of 3)-201 protein_coding Danio_rerio 0 771
ENSMUST00000150493 Actn4-006 processed_transcript Mus_musculus 0 760
ENSMUST00000148196 Actn4-003 protein_coding Mus_musculus 0 616
ENSDART00000130717 ACTN4 (3 of 3)-201 protein_coding Danio_rerio 0 529
ENSMUST00000143584 Actn4-007 retained_intron Mus_musculus 0 462
ENSMUST00000129338 Actn4-008 retained_intron Mus_musculus 0 388
ENSMUST00000066880 Capn12-201 protein_coding Mus_musculus 0 300

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