C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SMEK homolog 1, suppressor of mek1 (Dictyostelium)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000048305 Smek1-201 ENSMUSG00000041846 10090 - 12:101039409-101083702 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000048305
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000048305 3.317±1.28 5.657±0.60 8.061±1.10 3.296±0.81 2.224±0.61 2.092±0.43 3.461±0.50 6.291±2.39 3.347±0.55 2.638±0.95 4.465±3.11 10.134±2.84 4.822±1.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000AE CIL_0000AE_0002 CGP 12:100912700-101083702
CIL_0000AH CIL_0000AH_0002 CGP 12:101039409-101626009

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0006470 IMP protein dephosphorylation
GO:0030289 IDA protein phosphatase 4 complex
GO:0045722 IDA positive regulation of gluconeogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000554308 SMEK1-005 nonsense_mediated_decay Homo_sapiens 0 2492
ENST00000554390 SMEK1-002 non_stop_decay Homo_sapiens 0 3463
ENST00000554511 SMEK1-010 protein_coding Homo_sapiens 0 484
ENST00000554574 SMEK1-008 retained_intron Homo_sapiens 0 1160
ENST00000554684 SMEK1-001 protein_coding Homo_sapiens 0 5243
ENST00000554943 SMEK1-007 protein_coding Homo_sapiens 0 2752
ENST00000555029 SMEK1-011 protein_coding Homo_sapiens 0 547
ENST00000555462 SMEK1-003 protein_coding Homo_sapiens 0 2586
ENST00000555470 SMEK1-012 protein_coding Homo_sapiens 0 579
ENST00000555718 SMEK1-013 processed_transcript Homo_sapiens 0 929
ENST00000557018 SMEK1-009 protein_coding Homo_sapiens 0 697
ENST00000557382 SMEK1-014 retained_intron Homo_sapiens 0 1024

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