C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000418637 RP1-128O3.6-001 ENSG00000238055 9606 + 6:108318079-108318404 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartLiverLungOvaryPlacentaTestisENST00000418637
Transcript ID Adrenal Brain Breast Colon Heart Liver Lung Ovary Placenta Testis
ENST00000418637 0.498±0.00 0.208±0.02 1.755±1.30 0.903±0.00 0.368±0.25 0.041±0.00 0.044±0.00 0.659±0.13 0.077±0.00 0.458±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007KA CIL_0007KA_0001 UCNEbase 6:107632412-108443377
CIL_0008G4 CIL_0008G4_0001 VISTA 6:107814126-108415302
CIL_0009BP CIL_0009BP_0001 VISTA 6:107816039-108417248
CIL_0008YH CIL_0008YH_0001 VISTA 6:108288605-108890079
CIL_0001OT CIL_0001OT_0002 CGP 6:108294894-108684774

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000149857 Rpl36a-005 retained_intron Mus_musculus 0 220
ENSMUST00000170828 Rpl36a-004 nonsense_mediated_decay Mus_musculus 0 220
ENSMUST00000172023 Rpl36a-003 retained_intron Mus_musculus 0 220
ENSMUST00000113211 Rpl36a-001 protein_coding Mus_musculus 0 220
ENSMUST00000081987 Rpl36a-ps1-201 processed_pseudogene Mus_musculus 0 204
ENSMUST00000054544 Rpl36al-001 protein_coding Mus_musculus 0 204
ENSMUST00000110619 Rpl36al-002 protein_coding Mus_musculus 0 204
ENSMUST00000110620 Rpl36al-003 protein_coding Mus_musculus 0 204
ENSMUST00000120093 Rpl36a-ps3-001 processed_pseudogene Mus_musculus 0 198
ENSMUST00000142299 Gm13194-001 processed_pseudogene Mus_musculus 8.96831e-44 180
ENSMUST00000121439 Gm12936-001 processed_pseudogene Mus_musculus 2e-35 152
ENSMUST00000152266 Rpl36a-002 retained_intron Mus_musculus 9e-34 147

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