C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptotagmin binding, cytoplasmic RNA interacting protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000069221 Syncrip-001 ENSMUSG00000032423 10090 - 9:88449739-88482559 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000069221
Transcript ID Adipose Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000069221 2.546±1.00 7.673±1.18 7.942±1.37 1.756±0.84 1.533±0.29 2.436±0.10 2.928±1.49 3.478±0.78 3.490±1.57 1.906±0.00 4.218±0.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007K0 CIL_0007K0_0002 UCNEbase 9:87376892-88455782
CIL_0007TL CIL_0007TL_0002 VISTA 9:87895357-88499255
CIL_0005XI CIL_0005XI_0002 CGP 9:88376750-88456616
CIL_0005XJ CIL_0005XJ_0002 CGP 9:88407432-88482574

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005737 IDA cytoplasm
GO:0006397 IEA mRNA processing
GO:0008143 IDA poly(A) binding
GO:0008380 IEA RNA splicing
GO:0030529 ISS ribonucleoprotein complex
GO:0070937 ISS CRD-mediated mRNA stability complex
GO:0071204 IDA histone pre-mRNA 3'end processing complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000355238 SYNCRIP-002 protein_coding Homo_sapiens 0 7657
ENST00000369622 SYNCRIP-001 protein_coding Homo_sapiens 0 3118
ENST00000434910 RP4-775C13.1-001 processed_pseudogene Homo_sapiens 0 2610
ENST00000444272 SYNCRIP-003 protein_coding Homo_sapiens 0 961
ENST00000503906 RP11-321N4.5-001 nonsense_mediated_decay Homo_sapiens 0 604
ENST00000616122 SYNCRIP-201 protein_coding Homo_sapiens 0 7090

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