C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L10-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000081908 Rpl10l-001 ENSMUSG00000060499 10090 - 12:66283379-66284401 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartKidneyLungOvaryPlacentaTestisENSMUST00000081908
Transcript ID Heart Kidney Lung Ovary Placenta Testis
ENSMUST00000081908 0.109±0.08 0.069±0.05 0.038±0.00 0.295±0.11 0.525±0.40 176.192±59.52

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00046T CIL_00046T_0002 CGP 12:66283379-67222549

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005634 IEA nucleus
GO:0005844 IDA polysome
GO:0006412 IEA translation
GO:0007283 IEA spermatogenesis
GO:0016020 IEA membrane
GO:0022625 IDA cytosolic large ribosomal subunit

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000298283 RPL10L-001 protein_coding Homo_sapiens 0 645
ENST00000325000 CTD-2192J16.15-001 processed_pseudogene Homo_sapiens 0 665
ENST00000344746 RPL10-001 protein_coding Homo_sapiens 0 708
ENST00000369817 RPL10-008 protein_coding Homo_sapiens 0 708
ENST00000406022 RPL10-011 protein_coding Homo_sapiens 0 680
ENST00000417151 AC019181.3-001 processed_pseudogene Homo_sapiens 0 231
ENST00000424325 RPL10-201 protein_coding Homo_sapiens 0 708
ENST00000427682 RPL10-018 protein_coding Homo_sapiens 0 233
ENST00000427719 AC010095.7-001 processed_pseudogene Homo_sapiens 0 521
ENST00000428169 RPL10-020 protein_coding Homo_sapiens 0 233
ENST00000436473 RPL10-015 protein_coding Homo_sapiens 0 673
ENST00000457497 AC016708.2-001 processed_pseudogene Homo_sapiens 0 322
ENST00000467168 RPL10-012 retained_intron Homo_sapiens 0 536
ENST00000482732 RPL10-003 retained_intron Homo_sapiens 8.00001e-41 172
ENST00000485196 RPL10-010 retained_intron Homo_sapiens 0 564
ENST00000489200 RPL10-006 retained_intron Homo_sapiens 7.00005e-41 172
ENST00000491035 RPL10-005 retained_intron Homo_sapiens 0 344
ENST00000492572 RPL10-013 retained_intron Homo_sapiens 5.99994e-41 172
ENST00000509131 CTC-431G16.3-001 processed_pseudogene Homo_sapiens 9.99967e-42 172
ENST00000519384 RP11-10D7.5-001 processed_pseudogene Homo_sapiens 0 231
ENST00000522551 CTC-575D19.1-001 processed_pseudogene Homo_sapiens 0 665
ENST00000550757 RP11-114H23.3-001 processed_pseudogene Homo_sapiens 0 252
ENST00000585756 RPL10P15-001 processed_pseudogene Homo_sapiens 0 309
ENST00000618479 RP11-193E15.4-001 processed_pseudogene Homo_sapiens 0 279
ENST00000618723 RPL10-202 protein_coding Homo_sapiens 0 483

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