C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L13a pseudogene 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000439189 RPL13AP5-001 ENSG00000236552 9606 + 10:96750288-96750899 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000439189
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000439189 0.678±0.00 0.833±0.00 1.112±0.00 0.315±0.18 0.595±0.28 0.919±0.27 0.274±0.19 0.462±0.19 0.856±0.82 0.706±0.29 0.420±0.18 5.323±8.30 0.366±0.39 0.866±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003GA CIL_0003GA_0001 CGP 10:96593312-96981043
CIL_0008SO CIL_0008SO_0001 VISTA 10:96654859-97255972

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000150350 Rpl13a-001 protein_coding Mus_musculus 0 726
ENSMUST00000124300 Rpl13a-011 protein_coding Mus_musculus 0 706
ENSMUST00000117851 Gm11478-001 processed_pseudogene Mus_musculus 0 673
ENSMUST00000102669 Rpl13a-009 nonsense_mediated_decay Mus_musculus 0 664
ENSMUST00000125074 Rpl13a-006 processed_transcript Mus_musculus 0 636
ENSMUST00000142239 Rpl13a-010 processed_transcript Mus_musculus 0 381
ENSMUST00000131697 Rpl13a-005 retained_intron Mus_musculus 0 327
ENSMUST00000141807 Rpl13a-002 processed_transcript Mus_musculus 0 324
ENSMUST00000138887 Rpl13a-007 retained_intron Mus_musculus 4.2039e-45 185
ENSMUST00000152970 Rpl13a-003 retained_intron Mus_musculus 2e-22 110

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