C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L13a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000391857 RPL13A-001 ENSG00000142541 9606 + 19:49487554-49492308 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000391857
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000391857 290.475±0.00 267.592±0.00 47.481±0.00 134.487±0.00 237.880±9.06 200.389±0.00 64.125±0.00 134.881±0.00 205.549±0.00 145.713±0.00 126.833±0.00 744.287±489.30 729.861±151.12 97.819±26.09

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003735 NAS:IEA structural constituent of ribosome
GO:0005634 IDA nucleus
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0005925 IDA focal adhesion
GO:0006412 NAS:IEA translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0015934 TAS:IEA large ribosomal subunit
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0017148 IDA negative regulation of translation
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022625 IDA cytosolic large ribosomal subunit
GO:0030529 IDA ribonucleoprotein complex
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0071346 IDA cellular response to interferon-gamma
GO:0097452 IDA GAIT complex
GO:1901194 IDA negative regulation of formation of translation preinitiation complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000150350 Rpl13a-001 protein_coding Mus_musculus 0 817
ENSMUST00000124300 Rpl13a-011 protein_coding Mus_musculus 0 737
ENSMUST00000102669 Rpl13a-009 nonsense_mediated_decay Mus_musculus 0 706
ENSMUST00000117851 Gm11478-001 processed_pseudogene Mus_musculus 0 673
ENSMUST00000125074 Rpl13a-006 processed_transcript Mus_musculus 0 641
ENSMUST00000142239 Rpl13a-010 processed_transcript Mus_musculus 0 414
ENSMUST00000131697 Rpl13a-005 retained_intron Mus_musculus 0 366
ENSMUST00000141807 Rpl13a-002 processed_transcript Mus_musculus 0 364
ENSMUST00000138887 Rpl13a-007 retained_intron Mus_musculus 0 191
ENSMUST00000152970 Rpl13a-003 retained_intron Mus_musculus 1e-23 115

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