C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L13a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000467825 RPL13A-009 ENSG00000142541 9606 + 19:49487634-49491843 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000467825
Transcript ID Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000467825 107.519±0.00 436.415±0.00 287.203±0.00 328.102±0.00 444.903±0.00 1379.190±0.00 709.367±0.00 1236.400±0.00 641.981±84.40 164.277±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005840 IEA ribosome
GO:0006412 IEA translation
GO:0015934 IEA large ribosomal subunit

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000150350 Rpl13a-001 protein_coding Mus_musculus 0 652
ENSMUST00000124300 Rpl13a-011 protein_coding Mus_musculus 0 638
ENSMUST00000102669 Rpl13a-009 nonsense_mediated_decay Mus_musculus 0 588
ENSMUST00000117851 Gm11478-001 processed_pseudogene Mus_musculus 0 573
ENSMUST00000125074 Rpl13a-006 processed_transcript Mus_musculus 0 542
ENSMUST00000131697 Rpl13a-005 retained_intron Mus_musculus 0 337
ENSMUST00000142239 Rpl13a-010 processed_transcript Mus_musculus 0 329
ENSMUST00000141807 Rpl13a-002 processed_transcript Mus_musculus 0 327
ENSMUST00000138887 Rpl13a-007 retained_intron Mus_musculus 0 191
ENSMUST00000152970 Rpl13a-003 retained_intron Mus_musculus 5e-24 115

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