C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 12937
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000118333 Gm12937-001 ENSMUSG00000082498 10090 - 4:126795473-126796415 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000118333
Transcript ID Adipose Bladder Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000118333 0.234±0.09 0.075±0.00 0.222±0.00 0.099±0.00 0.238±0.12 0.159±0.01 0.147±0.00 0.318±0.00 0.016±0.00 0.138±0.05

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000294189 RPL29-001 protein_coding Homo_sapiens 3.00004e-41 172
ENST00000440227 RPL29P7-001 processed_pseudogene Homo_sapiens 1e-38 163
ENST00000442089 RP5-1057J7.1-001 processed_pseudogene Homo_sapiens 3e-30 135
ENST00000443998 RP11-632C17__A.1-001 processed_pseudogene Homo_sapiens 2e-37 159
ENST00000446953 RP1-130G2.1-001 processed_pseudogene Homo_sapiens 5e-33 145
ENST00000451924 RP11-42D20.1-001 processed_pseudogene Homo_sapiens 5e-33 145
ENST00000463466 RP11-874G11.1-001 processed_pseudogene Homo_sapiens 1e-34 150
ENST00000466397 RPL29-005 protein_coding Homo_sapiens 3.00004e-41 172
ENST00000475248 RPL29-008 protein_coding Homo_sapiens 3.00004e-41 172
ENST00000478358 RP11-490G8.1-001 processed_pseudogene Homo_sapiens 0 189
ENST00000479017 RPL29-009 protein_coding Homo_sapiens 3.00004e-41 172
ENST00000480306 RPL29-004 nonsense_mediated_decay Homo_sapiens 1e-30 137
ENST00000481629 RPL29-003 protein_coding Homo_sapiens 2e-30 137
ENST00000482584 RP11-342F17.1-001 processed_pseudogene Homo_sapiens 1e-34 150
ENST00000486188 RPL29P23-001 processed_pseudogene Homo_sapiens 4e-23 111
ENST00000486611 RPL29P3-001 processed_pseudogene Homo_sapiens 1e-29 134
ENST00000492277 RPL29-007 protein_coding Homo_sapiens 1.99993e-41 172
ENST00000494408 RPL29P11-001 processed_pseudogene Homo_sapiens 1.99993e-41 172
ENST00000495383 RPL29-006 protein_coding Homo_sapiens 3.00004e-41 172

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