C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000451924 RP11-42D20.1-001 ENSG00000233565 9606 - 3:186922286-186922753 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastHeartKidneyLungMuscleOvaryTestisENST00000451924
Transcript ID Adipose Adrenal Brain Breast Heart Kidney Lung Muscle Ovary Testis
ENST00000451924 0.042±0.00 0.046±0.00 0.050±0.00 0.050±0.00 0.122±0.00 0.047±0.00 0.046±0.00 0.158±0.00 0.128±0.00 0.041±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008LA CIL_0008LA_0001 VISTA 3:186647123-187250687

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000059802 Rpl29-002 protein_coding Mus_musculus 0 366
ENSMUST00000150576 Rpl29-001 protein_coding Mus_musculus 0 366
ENSMUST00000075962 Gm6344-001 processed_pseudogene Mus_musculus 0 353
ENSMUST00000118829 Gm13841-001 processed_pseudogene Mus_musculus 0 350
ENSMUST00000178557 Gm8210-001 processed_pseudogene Mus_musculus 0 350
ENSMUST00000179718 Gm15454-001 processed_pseudogene Mus_musculus 0 350
ENSMUST00000098994 Gm10709-201 protein_coding Mus_musculus 0 350
ENSMUST00000118248 Gm14036-001 processed_pseudogene Mus_musculus 0 344
ENSMUST00000105038 Gm3550-201 protein_coding Mus_musculus 0 344
ENSMUST00000119110 Gm12447-001 processed_pseudogene Mus_musculus 0 342
ENSMUST00000163749 Gm17669-201 protein_coding Mus_musculus 0 335
ENSMUST00000133732 Gm10913-001 processed_pseudogene Mus_musculus 0 333
ENSMUST00000118562 Gm12987-001 processed_pseudogene Mus_musculus 0 329
ENSMUST00000121282 Gm12508-001 processed_pseudogene Mus_musculus 0 327
ENSMUST00000178932 Gm5561-201 processed_pseudogene Mus_musculus 0 322
ENSMUST00000086508 Rpl29-ps2-201 processed_pseudogene Mus_musculus 0 316
ENSMUST00000128641 Uimc1-003 retained_intron Mus_musculus 0 315
ENSMUST00000119789 Gm12704-001 processed_pseudogene Mus_musculus 0 309
ENSMUST00000172270 Gm5218-201 protein_coding Mus_musculus 0 307
ENSMUST00000120287 Gm11533-001 processed_pseudogene Mus_musculus 0 305
ENSMUST00000119175 Gm11449-001 processed_pseudogene Mus_musculus 0 303
ENSMUST00000119668 Gm13213-001 processed_pseudogene Mus_musculus 0 300
ENSMUST00000077493 Gm8412-001 processed_pseudogene Mus_musculus 0 298
ENSMUST00000119044 Gm13545-001 processed_pseudogene Mus_musculus 0 298
ENSMUST00000119801 Gm11955-001 processed_pseudogene Mus_musculus 0 296
ENSMUST00000075321 Gm4889-201 protein_coding Mus_musculus 0 287
ENSMUST00000122403 Gm15212-001 processed_pseudogene Mus_musculus 0 276
ENSMUST00000112504 Gm15526-001 processed_pseudogene Mus_musculus 0 259
ENSMUST00000188361 RP23-299M19.2-001 processed_pseudogene Mus_musculus 0 255
ENSMUST00000117417 Gm13141-001 processed_pseudogene Mus_musculus 0 254
ENSMUST00000176181 Gm20702-001 processed_pseudogene Mus_musculus 0 254
ENSMUST00000075152 Gm4945-001 processed_pseudogene Mus_musculus 0 246
ENSMUST00000116110 Gm11799-001 processed_pseudogene Mus_musculus 0 237
ENSMUST00000117250 Gm12193-001 processed_pseudogene Mus_musculus 0 222
ENSMUST00000161849 Rpl29-ps1-001 processed_pseudogene Mus_musculus 0 204
ENSMUST00000119890 Gm8832-001 processed_pseudogene Mus_musculus 4e-39 165
ENSMUST00000120443 Gm11676-001 processed_pseudogene Mus_musculus 3e-35 152
ENSMUST00000118333 Gm12937-001 processed_pseudogene Mus_musculus 5e-33 145
ENSMUST00000118520 Gm11926-001 processed_pseudogene Mus_musculus 2e-21 106

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