C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000446953 RP1-130G2.1-001 ENSG00000229700 9606 - 6:20042455-20042940 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastHeartKidneyLiverMuscleOvaryTestisENST00000446953
Transcript ID Adipose Brain Breast Heart Kidney Liver Muscle Ovary Testis
ENST00000446953 0.074±0.00 0.130±0.00 0.899±0.00 0.182±0.00 0.278±0.00 0.034±0.00 0.101±0.00 0.111±0.05 0.035±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009DD CIL_0009DD_0001 VISTA 6:19675926-20277282

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000059802 Rpl29-002 protein_coding Mus_musculus 0 305
ENSMUST00000150576 Rpl29-001 protein_coding Mus_musculus 0 305
ENSMUST00000118829 Gm13841-001 processed_pseudogene Mus_musculus 0 289
ENSMUST00000178557 Gm8210-001 processed_pseudogene Mus_musculus 0 289
ENSMUST00000075962 Gm6344-001 processed_pseudogene Mus_musculus 0 289
ENSMUST00000098994 Gm10709-201 protein_coding Mus_musculus 0 289
ENSMUST00000120287 Gm11533-001 processed_pseudogene Mus_musculus 0 287
ENSMUST00000128641 Uimc1-003 retained_intron Mus_musculus 0 287
ENSMUST00000118248 Gm14036-001 processed_pseudogene Mus_musculus 0 283
ENSMUST00000179718 Gm15454-001 processed_pseudogene Mus_musculus 0 283
ENSMUST00000118562 Gm12987-001 processed_pseudogene Mus_musculus 0 279
ENSMUST00000121282 Gm12508-001 processed_pseudogene Mus_musculus 0 272
ENSMUST00000086508 Rpl29-ps2-201 processed_pseudogene Mus_musculus 0 270
ENSMUST00000119789 Gm12704-001 processed_pseudogene Mus_musculus 0 268
ENSMUST00000091759 Gm7731-001 processed_pseudogene Mus_musculus 0 268
ENSMUST00000117685 Gm11270-001 processed_pseudogene Mus_musculus 0 267
ENSMUST00000105038 Gm3550-201 protein_coding Mus_musculus 0 267
ENSMUST00000119175 Gm11449-001 processed_pseudogene Mus_musculus 0 265
ENSMUST00000119110 Gm12447-001 processed_pseudogene Mus_musculus 0 265
ENSMUST00000133732 Gm10913-001 processed_pseudogene Mus_musculus 0 265
ENSMUST00000077493 Gm8412-001 processed_pseudogene Mus_musculus 0 261
ENSMUST00000178932 Gm5561-201 processed_pseudogene Mus_musculus 0 261
ENSMUST00000163749 Gm17669-201 protein_coding Mus_musculus 0 261
ENSMUST00000112504 Gm15526-001 processed_pseudogene Mus_musculus 0 255
ENSMUST00000172270 Gm5218-201 protein_coding Mus_musculus 0 255
ENSMUST00000075321 Gm4889-201 protein_coding Mus_musculus 0 255
ENSMUST00000119668 Gm13213-001 processed_pseudogene Mus_musculus 0 254
ENSMUST00000117417 Gm13141-001 processed_pseudogene Mus_musculus 0 248
ENSMUST00000119044 Gm13545-001 processed_pseudogene Mus_musculus 0 246
ENSMUST00000122403 Gm15212-001 processed_pseudogene Mus_musculus 0 244
ENSMUST00000075152 Gm4945-001 processed_pseudogene Mus_musculus 0 244
ENSMUST00000119801 Gm11955-001 processed_pseudogene Mus_musculus 0 239
ENSMUST00000188361 RP23-299M19.2-001 processed_pseudogene Mus_musculus 0 228
ENSMUST00000117250 Gm12193-001 processed_pseudogene Mus_musculus 0 209
ENSMUST00000176181 Gm20702-001 processed_pseudogene Mus_musculus 0 196
ENSMUST00000118333 Gm12937-001 processed_pseudogene Mus_musculus 5e-33 145
ENSMUST00000161849 Rpl29-ps1-001 processed_pseudogene Mus_musculus 8e-31 137
ENSMUST00000118520 Gm11926-001 processed_pseudogene Mus_musculus 0.0000000000005 79
ENSMUST00000120590 Gm13740-001 processed_pseudogene Mus_musculus 0.000000001 68

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