C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L29 pseudogene 11
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000494408 RPL29P11-001 ENSG00000224858 9606 - 3:37016523-37017014 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000494408
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000494408 0.248±0.00 0.407±0.00 1.774±0.00 0.298±0.15 0.224±0.18 0.929±0.71 0.041±0.00 1.614±0.00 0.808±0.62 0.512±0.00 0.863±0.74 0.073±0.00 0.102±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00041G CIL_00041G_0002 CGP 3:36993332-37183689

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000150576 Rpl29-001 protein_coding Mus_musculus 0 409
ENSMUST00000059802 Rpl29-002 protein_coding Mus_musculus 0 396
ENSMUST00000098994 Gm10709-201 protein_coding Mus_musculus 0 392
ENSMUST00000128641 Uimc1-003 retained_intron Mus_musculus 0 372
ENSMUST00000075962 Gm6344-001 processed_pseudogene Mus_musculus 0 370
ENSMUST00000118829 Gm13841-001 processed_pseudogene Mus_musculus 0 366
ENSMUST00000178557 Gm8210-001 processed_pseudogene Mus_musculus 0 366
ENSMUST00000179718 Gm15454-001 processed_pseudogene Mus_musculus 0 366
ENSMUST00000118248 Gm14036-001 processed_pseudogene Mus_musculus 0 361
ENSMUST00000119110 Gm12447-001 processed_pseudogene Mus_musculus 0 359
ENSMUST00000105038 Gm3550-201 protein_coding Mus_musculus 0 359
ENSMUST00000086508 Rpl29-ps2-201 processed_pseudogene Mus_musculus 0 355
ENSMUST00000133732 Gm10913-001 processed_pseudogene Mus_musculus 0 351
ENSMUST00000121282 Gm12508-001 processed_pseudogene Mus_musculus 0 350
ENSMUST00000118562 Gm12987-001 processed_pseudogene Mus_musculus 0 346
ENSMUST00000119801 Gm11955-001 processed_pseudogene Mus_musculus 0 346
ENSMUST00000163749 Gm17669-201 protein_coding Mus_musculus 0 344
ENSMUST00000178932 Gm5561-201 processed_pseudogene Mus_musculus 0 339
ENSMUST00000077493 Gm8412-001 processed_pseudogene Mus_musculus 0 331
ENSMUST00000119175 Gm11449-001 processed_pseudogene Mus_musculus 0 331
ENSMUST00000120287 Gm11533-001 processed_pseudogene Mus_musculus 0 327
ENSMUST00000119789 Gm12704-001 processed_pseudogene Mus_musculus 0 326
ENSMUST00000075321 Gm4889-201 protein_coding Mus_musculus 0 320
ENSMUST00000172270 Gm5218-201 protein_coding Mus_musculus 0 318
ENSMUST00000119668 Gm13213-001 processed_pseudogene Mus_musculus 0 316
ENSMUST00000119044 Gm13545-001 processed_pseudogene Mus_musculus 0 298
ENSMUST00000176181 Gm20702-001 processed_pseudogene Mus_musculus 0 292
ENSMUST00000121617 Gm12340-001 unprocessed_pseudogene Mus_musculus 0 291
ENSMUST00000112504 Gm15526-001 processed_pseudogene Mus_musculus 0 287
ENSMUST00000075152 Gm4945-001 processed_pseudogene Mus_musculus 0 283
ENSMUST00000117417 Gm13141-001 processed_pseudogene Mus_musculus 0 281
ENSMUST00000122403 Gm15212-001 processed_pseudogene Mus_musculus 0 270
ENSMUST00000188361 RP23-299M19.2-001 processed_pseudogene Mus_musculus 0 250
ENSMUST00000161849 Rpl29-ps1-001 processed_pseudogene Mus_musculus 0 220
ENSMUST00000150617 Gm4487-001 processed_pseudogene Mus_musculus 0 211
ENSMUST00000118671 Gm3267-001 processed_pseudogene Mus_musculus 0 191
ENSMUST00000118333 Gm12937-001 processed_pseudogene Mus_musculus 1.99993e-41 172
ENSMUST00000120590 Gm13740-001 processed_pseudogene Mus_musculus 2e-27 126
ENSMUST00000118520 Gm11926-001 processed_pseudogene Mus_musculus 4e-24 115
ENSMUST00000121550 Gm11933-001 processed_pseudogene Mus_musculus 4e-19 99

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