C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 11935
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000118608 Gm11935-001 ENSMUSG00000081206 10090 - 4:33452491-33452889 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderColonHeartKidneyLiverOvaryPlacentaTestisENSMUST00000118608
Transcript ID Adipose Bladder Colon Heart Kidney Liver Ovary Placenta Testis
ENSMUST00000118608 0.282±0.15 0.060±0.00 0.346±0.00 0.134±0.00 0.141±0.00 0.327±0.28 0.241±0.00 0.213±0.00 0.129±0.02

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000355731 RPL23A-003 protein_coding Homo_sapiens 2e-33 147
ENST00000394935 RPL23A-004 protein_coding Homo_sapiens 2e-33 147
ENST00000394938 RPL23A-009 protein_coding Homo_sapiens 2e-33 147
ENST00000422514 RPL23A-001 protein_coding Homo_sapiens 5e-33 147
ENST00000434984 RPL23AP83-001 processed_pseudogene Homo_sapiens 2e-36 156
ENST00000435229 Z97634.3-001 transcribed_processed_pseudogene Homo_sapiens 1e-33 147
ENST00000437246 AC005884.1-001 processed_pseudogene Homo_sapiens 6e-32 141
ENST00000438548 RPL23AP46-001 processed_pseudogene Homo_sapiens 2e-31 139
ENST00000440847 AC046143.6-001 processed_pseudogene Homo_sapiens 2e-26 122
ENST00000446445 AC139452.2-001 processed_pseudogene Homo_sapiens 1e-33 147
ENST00000446637 RPL23AP6-001 processed_pseudogene Homo_sapiens 6e-32 141
ENST00000453844 RPL23AP3-001 processed_pseudogene Homo_sapiens 3e-35 152
ENST00000456160 AC009974.11-001 processed_pseudogene Homo_sapiens 2e-26 122
ENST00000457760 Z97634.3-002 processed_transcript Homo_sapiens 3e-33 147
ENST00000467573 RPL23AP12-001 processed_pseudogene Homo_sapiens 1e-28 130
ENST00000468281 RP4-816N1.1-001 processed_pseudogene Homo_sapiens 6e-27 124
ENST00000471152 RP11-3P17.3-001 processed_pseudogene Homo_sapiens 1e-33 147
ENST00000472628 RPL23A-006 protein_coding Homo_sapiens 2e-33 147
ENST00000479658 AC114752.2-001 processed_pseudogene Homo_sapiens 1e-24 117
ENST00000484754 RP11-4H14.1-001 processed_pseudogene Homo_sapiens 0.000000000002 77
ENST00000489946 RPL23AP10-001 processed_pseudogene Homo_sapiens 0.00000001 64
ENST00000496182 RPL23A-002 protein_coding Homo_sapiens 2e-33 147
ENST00000498163 RP11-1149O23.1-001 processed_pseudogene Homo_sapiens 4e-29 132
ENST00000498752 RP11-472I20.1-001 processed_pseudogene Homo_sapiens 3e-35 152
ENST00000580755 RPL23A-010 retained_intron Homo_sapiens 9e-20 100
ENST00000599928 RPL23AP78-001 processed_pseudogene Homo_sapiens 5e-28 128

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