C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000498752 RP11-472I20.1-001 ENSG00000243721 9606 + 11:43718676-43719146 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000498752
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000498752 0.063±0.00 0.103±0.00 2.376±0.00 0.266±0.23 1.472±1.30 0.774±0.74 0.408±0.00 0.068±0.00 0.329±0.30 0.694±0.66 0.997±0.76 0.444±0.53 0.060±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002UX CIL_0002UX_0002 CGP 11:43556436-43920266

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102483 Rpl23a-001 protein_coding Mus_musculus 0 510
ENSMUST00000104925 Rpl23a-ps3-201 protein_coding Mus_musculus 0 505
ENSMUST00000096020 Gm10335-001 processed_pseudogene Mus_musculus 0 499
ENSMUST00000099431 Gm10132-001 processed_pseudogene Mus_musculus 0 499
ENSMUST00000148102 Gm3362-001 processed_pseudogene Mus_musculus 0 490
ENSMUST00000078729 Gm20900-201 processed_pseudogene Mus_musculus 0 486
ENSMUST00000127270 Rpl23a-002 retained_intron Mus_musculus 0 479
ENSMUST00000180011 Gm8112-201 processed_pseudogene Mus_musculus 0 473
ENSMUST00000120313 Gm5384-001 processed_pseudogene Mus_musculus 0 468
ENSMUST00000118798 Gm7312-001 processed_pseudogene Mus_musculus 0 459
ENSMUST00000085589 Gm6177-001 processed_pseudogene Mus_musculus 0 438
ENSMUST00000119136 Gm8217-001 processed_pseudogene Mus_musculus 0 399
ENSMUST00000118777 Rpl23a-ps14-001 processed_pseudogene Mus_musculus 0 396
ENSMUST00000121008 Rpl23a-ps4-001 processed_pseudogene Mus_musculus 0 390
ENSMUST00000085632 Rpl23a-ps1-001 processed_pseudogene Mus_musculus 0 372
ENSMUST00000121605 Gm12322-001 processed_pseudogene Mus_musculus 0 370
ENSMUST00000187124 RP23-466F9.2-001 processed_pseudogene Mus_musculus 0 351
ENSMUST00000105087 Gm3940-001 processed_pseudogene Mus_musculus 0 344
ENSMUST00000186898 RP23-466F9.4-001 processed_pseudogene Mus_musculus 0 335
ENSMUST00000191583 Rpl23a-ps11-001 processed_pseudogene Mus_musculus 0 335
ENSMUST00000189660 RP23-466F9.10-001 processed_pseudogene Mus_musculus 0 329
ENSMUST00000188369 Rpl23a-ps9-001 processed_pseudogene Mus_musculus 0 329
ENSMUST00000187331 RP23-466F9.8-001 processed_pseudogene Mus_musculus 0 327
ENSMUST00000161498 Gm16303-001 processed_pseudogene Mus_musculus 0 291
ENSMUST00000120350 Rpl23a-ps13-001 processed_pseudogene Mus_musculus 0 285
ENSMUST00000118608 Gm11935-001 processed_pseudogene Mus_musculus 3e-35 152

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