C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L23a pseudogene 12
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000467573 RPL23AP12-001 ENSG00000228861 9606 + 21:39127568-39128040 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainHeartLungOvaryTestisENST00000467573
Transcript ID Adrenal Brain Heart Lung Ovary Testis
ENST00000467573 0.036±0.00 0.075±0.00 0.032±0.00 0.036±0.00 0.128±0.00 0.096±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007UB CIL_0007UB_0001 VISTA 21:38689433-39291200
CIL_0000XL CIL_0000XL_0001 CGP 21:38805307-39183851

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102483 Rpl23a-001 protein_coding Mus_musculus 0 484
ENSMUST00000104925 Rpl23a-ps3-201 protein_coding Mus_musculus 0 479
ENSMUST00000096020 Gm10335-001 processed_pseudogene Mus_musculus 0 473
ENSMUST00000099431 Gm10132-001 processed_pseudogene Mus_musculus 0 473
ENSMUST00000148102 Gm3362-001 processed_pseudogene Mus_musculus 0 470
ENSMUST00000078729 Gm20900-201 processed_pseudogene Mus_musculus 0 470
ENSMUST00000127270 Rpl23a-002 retained_intron Mus_musculus 0 462
ENSMUST00000180011 Gm8112-201 processed_pseudogene Mus_musculus 0 459
ENSMUST00000120313 Gm5384-001 processed_pseudogene Mus_musculus 0 442
ENSMUST00000085589 Gm6177-001 processed_pseudogene Mus_musculus 0 429
ENSMUST00000118777 Rpl23a-ps14-001 processed_pseudogene Mus_musculus 0 396
ENSMUST00000119136 Gm8217-001 processed_pseudogene Mus_musculus 0 390
ENSMUST00000105085 Gm10923-001 processed_pseudogene Mus_musculus 0 383
ENSMUST00000085632 Rpl23a-ps1-001 processed_pseudogene Mus_musculus 0 364
ENSMUST00000121008 Rpl23a-ps4-001 processed_pseudogene Mus_musculus 0 359
ENSMUST00000178439 Gm21959-201 processed_pseudogene Mus_musculus 0 359
ENSMUST00000121605 Gm12322-001 processed_pseudogene Mus_musculus 0 353
ENSMUST00000105087 Gm3940-001 processed_pseudogene Mus_musculus 0 327
ENSMUST00000187124 RP23-466F9.2-001 processed_pseudogene Mus_musculus 0 296
ENSMUST00000120350 Rpl23a-ps13-001 processed_pseudogene Mus_musculus 0 291
ENSMUST00000187732 RP23-349I9.17-001 processed_pseudogene Mus_musculus 0 281
ENSMUST00000191583 Rpl23a-ps11-001 processed_pseudogene Mus_musculus 0 279
ENSMUST00000161498 Gm16303-001 processed_pseudogene Mus_musculus 0 274
ENSMUST00000188369 Rpl23a-ps9-001 processed_pseudogene Mus_musculus 0 274
ENSMUST00000187984 RP23-349I9.11-001 processed_pseudogene Mus_musculus 0 270
ENSMUST00000187903 RP23-349I9.24-001 processed_pseudogene Mus_musculus 0 270
ENSMUST00000189660 RP23-466F9.10-001 processed_pseudogene Mus_musculus 0 263
ENSMUST00000187331 RP23-466F9.8-001 processed_pseudogene Mus_musculus 0 261
ENSMUST00000185244 RP23-349I9.15-001 processed_pseudogene Mus_musculus 0 261
ENSMUST00000186898 RP23-466F9.4-001 processed_pseudogene Mus_musculus 0 257
ENSMUST00000185511 Rpl23a-ps10-001 processed_pseudogene Mus_musculus 0 250
ENSMUST00000119619 Gm7219-001 processed_pseudogene Mus_musculus 0 244
ENSMUST00000117846 Gm11673-001 processed_pseudogene Mus_musculus 2e-32 143
ENSMUST00000118608 Gm11935-001 processed_pseudogene Mus_musculus 1e-28 130

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