C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L23a pseudogene 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000453844 RPL23AP3-001 ENSG00000214914 9606 - 21:36016079-36016546 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastKidneyLungMuscleOvaryTestisENST00000453844
Transcript ID Adipose Adrenal Brain Breast Kidney Lung Muscle Ovary Testis
ENST00000453844 0.138±0.00 0.298±0.00 0.078±0.00 0.077±0.00 0.245±0.00 0.147±0.00 0.161±0.00 0.400±0.00 0.132±0.03

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000104925 Rpl23a-ps3-201 protein_coding Mus_musculus 0 540
ENSMUST00000180011 Gm8112-201 processed_pseudogene Mus_musculus 0 538
ENSMUST00000102483 Rpl23a-001 protein_coding Mus_musculus 0 534
ENSMUST00000096020 Gm10335-001 processed_pseudogene Mus_musculus 0 523
ENSMUST00000099431 Gm10132-001 processed_pseudogene Mus_musculus 0 523
ENSMUST00000148102 Gm3362-001 processed_pseudogene Mus_musculus 0 520
ENSMUST00000078729 Gm20900-201 processed_pseudogene Mus_musculus 0 510
ENSMUST00000127270 Rpl23a-002 retained_intron Mus_musculus 0 503
ENSMUST00000120313 Gm5384-001 processed_pseudogene Mus_musculus 0 499
ENSMUST00000085589 Gm6177-001 processed_pseudogene Mus_musculus 0 490
ENSMUST00000118777 Rpl23a-ps14-001 processed_pseudogene Mus_musculus 0 427
ENSMUST00000119136 Gm8217-001 processed_pseudogene Mus_musculus 0 418
ENSMUST00000105085 Gm10923-001 processed_pseudogene Mus_musculus 0 414
ENSMUST00000178439 Gm21959-201 processed_pseudogene Mus_musculus 0 396
ENSMUST00000121605 Gm12322-001 processed_pseudogene Mus_musculus 0 390
ENSMUST00000105087 Gm3940-001 processed_pseudogene Mus_musculus 0 366
ENSMUST00000120350 Rpl23a-ps13-001 processed_pseudogene Mus_musculus 0 318
ENSDART00000003001 rpl23a-001 protein_coding Danio_rerio 0 316
ENSMUST00000161498 Gm16303-001 processed_pseudogene Mus_musculus 0 302
ENSDART00000141001 rpl23a-002 processed_transcript Danio_rerio 0 298
ENSDART00000146573 rpl23a-004 protein_coding Danio_rerio 0 292
ENSMUST00000119619 Gm7219-001 processed_pseudogene Mus_musculus 0 267
ENSDART00000134939 rpl23a-003 retained_intron Danio_rerio 0 237
ENSMUST00000118608 Gm11935-001 processed_pseudogene Mus_musculus 3e-35 152
ENSMUST00000117846 Gm11673-001 processed_pseudogene Mus_musculus 8e-31 137

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