C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lactate dehydrogenase A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000486690 LDHA-017 ENSG00000134333 9606 + 11:18396818-18405495 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryPlacentaTestisENST00000486690
Transcript ID Ovary Placenta Testis
ENST00000486690 252.364±0.00 224.640±0.00 103.493±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000445 CIL_000445_0001 CGP 11:18322295-18408425
CIL_000369 CIL_000369_0001 CGP 11:18394388-18452058

Gene Ontology

GO IDEvidence TypeGO Description
GO:0016616 IEA oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0044262 IEA cellular carbohydrate metabolic process
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000005051 Ldha-002 protein_coding Mus_musculus 0 521
ENSMUST00000048209 Ldha-001 protein_coding Mus_musculus 0 521
ENSMUST00000092621 Ldha-006 protein_coding Mus_musculus 0 468
ENSMUST00000147535 Ldha-003 protein_coding Mus_musculus 0 468
ENSMUST00000119390 Ldha-ps-001 processed_pseudogene Mus_musculus 0 449
ENSMUST00000118722 Ldha-ps2-001 processed_pseudogene Mus_musculus 0 435
ENSMUST00000188353 RP24-77I21.1-001 processed_pseudogene Mus_musculus 0 403
ENSMUST00000187574 RP23-251N10.2-001 processed_pseudogene Mus_musculus 0 403
ENSMUST00000121188 Gm13365-001 processed_pseudogene Mus_musculus 0 361
ENSMUST00000121445 Gm11980-001 processed_pseudogene Mus_musculus 0 327
ENSMUST00000132157 Ldha-008 retained_intron Mus_musculus 0 313
ENSMUST00000133062 Ldha-007 processed_transcript Mus_musculus 2.00386e-43 180
ENSMUST00000125862 Ldha-004 processed_transcript Mus_musculus 2.00386e-43 180
ENSMUST00000124696 Ldha-005 retained_intron Mus_musculus 2.00386e-43 180
ENSMUST00000119515 Gm11814-001 processed_pseudogene Mus_musculus 3.00004e-41 172
ENSMUST00000117722 Gm14676-001 processed_pseudogene Mus_musculus 3e-31 139

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