C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lactate dehydrogenase A pseudogene 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000397561 LDHAP4-001 ENSG00000214110 9606 - 9:14921337-14922334 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000397561
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000397561 2.794±0.00 1.368±0.00 0.269±0.00 0.764±0.28 1.012±0.84 1.201±0.61 1.125±0.89 2.060±2.01 3.880±3.83 1.361±0.66 0.996±0.22 1.793±1.74 4.357±2.08 1.383±0.21

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000943 CIL_000943_0001 VISTA 9:14449160-15052146
CIL_00014A CIL_00014A_0001 CGP 9:14734666-15307360

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000005051 Ldha-002 protein_coding Mus_musculus 0 950
ENSMUST00000048209 Ldha-001 protein_coding Mus_musculus 0 950
ENSMUST00000119390 Ldha-ps-001 processed_pseudogene Mus_musculus 0 835
ENSMUST00000120376 Gm13315-001 processed_pseudogene Mus_musculus 0 822
ENSMUST00000188353 RP24-77I21.1-001 processed_pseudogene Mus_musculus 0 741
ENSMUST00000118722 Ldha-ps2-001 processed_pseudogene Mus_musculus 0 725
ENSMUST00000187574 RP23-251N10.2-001 processed_pseudogene Mus_musculus 0 680
ENSMUST00000092621 Ldha-006 protein_coding Mus_musculus 0 678
ENSMUST00000147535 Ldha-003 protein_coding Mus_musculus 0 678
ENSMUST00000121188 Gm13365-001 processed_pseudogene Mus_musculus 0 662
ENSMUST00000121445 Gm11980-001 processed_pseudogene Mus_musculus 0 592
ENSMUST00000132157 Ldha-008 retained_intron Mus_musculus 0 562
ENSMUST00000117722 Gm14676-001 processed_pseudogene Mus_musculus 0 331
ENSMUST00000119515 Gm11814-001 processed_pseudogene Mus_musculus 0 318
ENSMUST00000117921 Gm13809-001 processed_pseudogene Mus_musculus 0 246
ENSMUST00000133062 Ldha-007 processed_transcript Mus_musculus 0 244
ENSMUST00000125862 Ldha-004 processed_transcript Mus_musculus 0 235
ENSMUST00000124696 Ldha-005 retained_intron Mus_musculus 5e-36 156

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