C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lactate dehydrogenase A pseudogene 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000394996 LDHAP5-001 ENSG00000213574 9606 - 10:118932674-118933295 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungPlacentaENST00000394996
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Placenta
ENST00000394996 0.109±0.00 0.023±0.00 0.023±0.00 0.068±0.00 0.116±0.10 0.067±0.00 0.061±0.00 0.021±0.00 0.043±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00062M CIL_00062M_0001 CGP 10:118674167-119033732

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000005051 Ldha-002 protein_coding Mus_musculus 0 586
ENSMUST00000048209 Ldha-001 protein_coding Mus_musculus 0 586
ENSMUST00000119390 Ldha-ps-001 processed_pseudogene Mus_musculus 0 547
ENSMUST00000118339 Gm13549-001 processed_pseudogene Mus_musculus 0 544
ENSMUST00000121188 Gm13365-001 processed_pseudogene Mus_musculus 0 518
ENSMUST00000118804 Gm15707-001 processed_pseudogene Mus_musculus 0 497
ENSMUST00000120376 Gm13315-001 processed_pseudogene Mus_musculus 0 492
ENSMUST00000121000 Gm13937-001 processed_pseudogene Mus_musculus 0 488
ENSMUST00000119515 Gm11814-001 processed_pseudogene Mus_musculus 0 475
ENSMUST00000120803 Gm14911-001 processed_pseudogene Mus_musculus 0 438
ENSMUST00000188353 RP24-77I21.1-001 processed_pseudogene Mus_musculus 0 422
ENSMUST00000118722 Ldha-ps2-001 processed_pseudogene Mus_musculus 0 416
ENSMUST00000187574 RP23-251N10.2-001 processed_pseudogene Mus_musculus 0 388
ENSMUST00000092621 Ldha-006 protein_coding Mus_musculus 0 300
ENSMUST00000147535 Ldha-003 protein_coding Mus_musculus 0 300
ENSMUST00000132157 Ldha-008 retained_intron Mus_musculus 8e-37 158

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