C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lactate dehydrogenase A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000227157 LDHA-003 ENSG00000134333 9606 + 11:18394586-18408218 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderColonMuscleENST00000227157
Transcript ID Bladder Colon Muscle
ENST00000227157 5.631±0.00 7.921±0.00 20.537±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000445 CIL_000445_0001 CGP 11:18322295-18408425
CIL_000369 CIL_000369_0001 CGP 11:18394388-18452058

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0004459 NAS L-lactate dehydrogenase activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005829 TAS cytosol
GO:0005975 IEA carbohydrate metabolic process
GO:0006090 TAS pyruvate metabolic process
GO:0006096 NAS glycolytic process
GO:0016020 IDA membrane
GO:0016491 IEA oxidoreductase activity
GO:0016616 IEA oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0021762 IEP substantia nigra development
GO:0044237 TAS cellular metabolic process
GO:0044262 IEA cellular carbohydrate metabolic process
GO:0044281 TAS small molecule metabolic process
GO:0055114 IEA oxidation-reduction process
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000092621 Ldha-006 protein_coding Mus_musculus 0 784
ENSMUST00000005051 Ldha-002 protein_coding Mus_musculus 0 782
ENSMUST00000048209 Ldha-001 protein_coding Mus_musculus 0 782
ENSMUST00000147535 Ldha-003 protein_coding Mus_musculus 0 782
ENSMUST00000118722 Ldha-ps2-001 processed_pseudogene Mus_musculus 0 682
ENSMUST00000119390 Ldha-ps-001 processed_pseudogene Mus_musculus 0 682
ENSMUST00000188353 RP24-77I21.1-001 processed_pseudogene Mus_musculus 0 649
ENSMUST00000120376 Gm13315-001 processed_pseudogene Mus_musculus 0 638
ENSMUST00000132157 Ldha-008 retained_intron Mus_musculus 0 627
ENSMUST00000187574 RP23-251N10.2-001 processed_pseudogene Mus_musculus 0 599
ENSMUST00000121188 Gm13365-001 processed_pseudogene Mus_musculus 0 514
ENSMUST00000121445 Gm11980-001 processed_pseudogene Mus_musculus 0 492
ENSMUST00000119515 Gm11814-001 processed_pseudogene Mus_musculus 0 359
ENSMUST00000117722 Gm14676-001 processed_pseudogene Mus_musculus 0 346
ENSMUST00000133062 Ldha-007 processed_transcript Mus_musculus 0 276
ENSMUST00000125862 Ldha-004 processed_transcript Mus_musculus 0 267
ENSMUST00000124696 Ldha-005 retained_intron Mus_musculus 9.94922e-44 182

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