C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S15a pseudogene 25
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000489168 RPS15AP25-001 ENSG00000236191 9606 - 8:68525517-68525906 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeKidneyMuscleTestisENST00000489168
Transcript ID Adipose Kidney Muscle Testis
ENST00000489168 0.067±0.00 0.035±0.00 0.030±0.00 0.031±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001SD CIL_0001SD_0002 CGP 8:67952118-68819022
CIL_0001SG CIL_0001SG_0002 CGP 8:68330722-69660915

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000172457 Rps15a-201 protein_coding Mus_musculus 0 322
ENSMUST00000106588 Rps15a-004 protein_coding Mus_musculus 0 322
ENSMUST00000131374 Rps15a-001 protein_coding Mus_musculus 0 322
ENSMUST00000117430 Rps15a-ps7-001 processed_pseudogene Mus_musculus 0 311
ENSMUST00000121072 Rps15a-ps3-001 processed_pseudogene Mus_musculus 0 311
ENSMUST00000119415 Rps15a-ps4-001 processed_pseudogene Mus_musculus 0 307
ENSMUST00000087473 Rps15a-ps2-001 processed_pseudogene Mus_musculus 0 305
ENSMUST00000117476 Rps15a-ps6-001 processed_pseudogene Mus_musculus 0 300
ENSMUST00000182051 Gm26983-001 processed_pseudogene Mus_musculus 0 296
ENSMUST00000132586 Rps15a-ps5-001 processed_pseudogene Mus_musculus 0 294
ENSDART00000128613 rps15a-001 protein_coding Danio_rerio 0 257
ENSMUST00000117914 Rps15a-ps8-001 processed_pseudogene Mus_musculus 0 248
ENSMUST00000106590 Rps15a-005 protein_coding Mus_musculus 0 241
ENSMUST00000120440 Gm12308-001 processed_pseudogene Mus_musculus 0 233
ENSMUST00000155424 Gm16218-001 processed_pseudogene Mus_musculus 0 230
ENSMUST00000134270 Rps15a-006 retained_intron Mus_musculus 0 207
ENSMUST00000128482 Rps15a-003 protein_coding Mus_musculus 4e-38 161
ENSMUST00000131840 Rps15a-002 protein_coding Mus_musculus 5e-37 158
ENSDART00000018822 rps15a-002 retained_intron Danio_rerio 4e-33 145

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