C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000403958 RP3-340B19.2-001 ENSG00000219023 9606 + 6:35555873-35556264 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalColonKidneyLungMuscleOvaryPlacentaTestisENST00000403958
Transcript ID Adipose Adrenal Colon Kidney Lung Muscle Ovary Placenta Testis
ENST00000403958 0.042±0.00 0.089±0.00 0.042±0.00 0.091±0.00 0.043±0.00 0.307±0.00 0.101±0.01 0.195±0.11 0.108±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008UQ CIL_0008UQ_0001 VISTA 6:35189352-35792826
CIL_0002F0 CIL_0002F0_0001 CGP 6:35497874-35728583

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000172457 Rps15a-201 protein_coding Mus_musculus 0 412
ENSMUST00000106588 Rps15a-004 protein_coding Mus_musculus 0 412
ENSMUST00000131374 Rps15a-001 protein_coding Mus_musculus 0 412
ENSMUST00000117476 Rps15a-ps6-001 processed_pseudogene Mus_musculus 0 407
ENSMUST00000182051 Gm26983-001 processed_pseudogene Mus_musculus 0 390
ENSMUST00000087473 Rps15a-ps2-001 processed_pseudogene Mus_musculus 0 390
ENSMUST00000132586 Rps15a-ps5-001 processed_pseudogene Mus_musculus 0 385
ENSMUST00000121072 Rps15a-ps3-001 processed_pseudogene Mus_musculus 0 379
ENSDART00000128613 rps15a-001 protein_coding Danio_rerio 0 351
ENSDART00000018822 rps15a-002 retained_intron Danio_rerio 8e-40 167

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