C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 39
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000135274 Rbm39-017 ENSMUSG00000027620 10090 - 2:156161831-156165212 retained_intron

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008EI CIL_0008EI_0002 VISTA 2:155562263-156164147
CIL_0000WY CIL_0000WY_0002 CGP 2:156144039-156180238
CIL_0000X2 CIL_0000X2_0002 CGP 2:156147239-156309952

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000253363 RBM39-002 protein_coding Homo_sapiens 0 590
ENST00000338163 RBM39-008 nonsense_mediated_decay Homo_sapiens 0 590
ENST00000361162 RBM39-001 protein_coding Homo_sapiens 0 590
ENST00000374038 RBM39-020 protein_coding Homo_sapiens 0 399
ENST00000397254 RP6-218J18.2-001 processed_pseudogene Homo_sapiens 0 518
ENST00000403542 RBM39-006 nonsense_mediated_decay Homo_sapiens 0 590
ENST00000412738 RBM39-017 nonsense_mediated_decay Homo_sapiens 0 379
ENST00000429968 RBM39-005 nonsense_mediated_decay Homo_sapiens 0 590
ENST00000444878 RBM39-007 nonsense_mediated_decay Homo_sapiens 0 590
ENST00000448303 RBM39-035 protein_coding Homo_sapiens 0 590
ENST00000461283 RBM39-009 retained_intron Homo_sapiens 0 590
ENST00000463004 RBM39-004 retained_intron Homo_sapiens 0 590
ENST00000490484 RBM39-036 retained_intron Homo_sapiens 0 527
ENST00000492779 RBM39-010 retained_intron Homo_sapiens 0 590
ENST00000494274 RBM39-040 processed_transcript Homo_sapiens 0 475
ENST00000528062 RBM39-015 protein_coding Homo_sapiens 0 590
ENST00000615771 RBM39-047 processed_transcript Homo_sapiens 2e-33 147

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