C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sodium channel, voltage-gated, type I, alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000138910 Scn1a-006 ENSMUSG00000064329 10090 - 2:66335443-66440840 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartENSMUST00000138910
Transcript ID Heart
ENSMUST00000138910 0.132±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00087V CIL_00087V_0002 VISTA 2:65692128-66294633
CIL_0006CL CIL_0006CL_0002 CGP 2:66184327-66440840
CIL_0006CK CIL_0006CK_0002 CGP 2:66270781-66634962

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001508 IMP action potential
GO:0001518 IEA voltage-gated sodium channel complex
GO:0005248 IMP voltage-gated sodium channel activity
GO:0006814 IMP sodium ion transport
GO:0007628 IMP adult walking behavior
GO:0014704 IDA intercalated disc
GO:0016020 IDA membrane
GO:0019227 IMP neuronal action potential propagation
GO:0019228 IMP neuronal action potential
GO:0030315 IDA T-tubule
GO:0030424 IDA axon
GO:0033268 IDA node of Ranvier
GO:0034706 IPI sodium channel complex
GO:0035725 IEA sodium ion transmembrane transport
GO:0042391 IMP regulation of membrane potential
GO:0043025 IDA neuronal cell body
GO:0043194 IDA axon initial segment
GO:0050884 IMP neuromuscular process controlling posture
GO:0086010 IBA membrane depolarization during action potential

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000283254 SCN3A-001 protein_coding Homo_sapiens 0 510
ENST00000283256 SCN2A-001 protein_coding Homo_sapiens 0 536
ENST00000303395 SCN1A-001 protein_coding Homo_sapiens 0 747
ENST00000360093 SCN3A-201 protein_coding Homo_sapiens 0 510
ENST00000375405 SCN1A-002 protein_coding Homo_sapiens 0 780
ENST00000375427 SCN2A-002 protein_coding Homo_sapiens 0 536
ENST00000375437 SCN2A-201 protein_coding Homo_sapiens 0 536
ENST00000409050 SCN1A-003 protein_coding Homo_sapiens 0 747
ENST00000409101 SCN3A-002 protein_coding Homo_sapiens 0 510
ENST00000423058 SCN1A-201 protein_coding Homo_sapiens 0 806
ENST00000424833 SCN2A-003 protein_coding Homo_sapiens 0 536
ENST00000440431 SCN3A-004 protein_coding Homo_sapiens 0 510
ENST00000453007 SCN3A-003 protein_coding Homo_sapiens 0 510
ENST00000480032 SCN2A-005 retained_intron Homo_sapiens 0 536
ENST00000507401 SCN1A-007 retained_intron Homo_sapiens 0 473

Loading