C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: high mobility group box 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000155086 Hmgb1-009 ENSMUSG00000066551 10090 - 5:149049153-149050447 retained_intron

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007UA CIL_0007UA_0002 VISTA 5:149020224-149622595
CIL_0004CF CIL_0004CF_0002 CGP 5:149046702-149215434

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000326004 HMGB1-003 protein_coding Homo_sapiens 0 431
ENST00000339872 HMGB1-001 protein_coding Homo_sapiens 0 433
ENST00000341423 HMGB1-004 protein_coding Homo_sapiens 0 433
ENST00000399489 HMGB1-009 protein_coding Homo_sapiens 0 431
ENST00000399494 HMGB1-011 protein_coding Homo_sapiens 0 433
ENST00000405805 HMGB1-012 protein_coding Homo_sapiens 0 433
ENST00000455362 HMGB1P4-001 processed_pseudogene Homo_sapiens 0 340
ENST00000490788 HMGB1-008 processed_transcript Homo_sapiens 0 315
ENST00000522557 HMGB1P1-001 processed_pseudogene Homo_sapiens 0 399
ENST00000558211 HMGB1P8-001 processed_pseudogene Homo_sapiens 6e-35 152
ENST00000569046 RP11-673C5.1-001 processed_pseudogene Homo_sapiens 0 416

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