C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
||||||
| Description: | high mobility group box 1 | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENSMUST00000155086  |
Hmgb1-009 |
ENSMUSG00000066551 |
10090 | - |
5:149049153-149050447  |
retained_intron |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0007UA | CIL_0007UA_0002 | VISTA | 5:149020224-149622595 |
| CIL_0004CF | CIL_0004CF_0002 | CGP | 5:149046702-149215434 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| No GO terms available. | ||
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENST00000326004
|
HMGB1-003 | protein_coding | Homo_sapiens | 0 | 431 |
|
ENST00000339872
|
HMGB1-001 | protein_coding | Homo_sapiens | 0 | 433 |
|
ENST00000341423
|
HMGB1-004 | protein_coding | Homo_sapiens | 0 | 433 |
|
ENST00000399489
|
HMGB1-009 | protein_coding | Homo_sapiens | 0 | 431 |
|
ENST00000399494
|
HMGB1-011 | protein_coding | Homo_sapiens | 0 | 433 |
|
ENST00000405805
|
HMGB1-012 | protein_coding | Homo_sapiens | 0 | 433 |
|
ENST00000455362
|
HMGB1P4-001 | processed_pseudogene | Homo_sapiens | 0 | 340 |
|
ENST00000490788
|
HMGB1-008 | processed_transcript | Homo_sapiens | 0 | 315 |
|
ENST00000522557
|
HMGB1P1-001 | processed_pseudogene | Homo_sapiens | 0 | 399 |
|
ENST00000558211
|
HMGB1P8-001 | processed_pseudogene | Homo_sapiens | 6e-35 | 152 |
|
ENST00000569046
|
RP11-673C5.1-001 | processed_pseudogene | Homo_sapiens | 0 | 416 |
