C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 16138
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000159341 Gm16138-001 ENSMUSG00000089811 10090 - 15:37331989-37332666 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLungOvaryPlacentaENSMUST00000159341
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Lung Ovary Placenta
ENSMUST00000159341 0.317±0.00 0.197±0.10 0.035±0.02 0.266±0.14 0.319±0.08 0.055±0.00 0.169±0.10 0.135±0.06 0.328±0.17 0.108±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00088H CIL_00088H_0002 VISTA 15:36752172-37355037
CIL_000532 CIL_000532_0003 CGP 15:36997031-37363569
CIL_0004T4 CIL_0004T4_0003 CGP 15:37233036-37792570

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000393351 RP5-1106E3.1-001 processed_pseudogene Homo_sapiens 5e-40 169
ENST00000428058 CTD-2666L21.2-001 processed_pseudogene Homo_sapiens 0 202
ENST00000434010 RPS2P1-001 processed_pseudogene Homo_sapiens 0 200
ENST00000436136 RP11-16L9.1-001 processed_pseudogene Homo_sapiens 4.00001e-41 172
ENST00000479476 RPS2P6-001 processed_pseudogene Homo_sapiens 2e-30 137
ENST00000491725 RP11-810P12.1-001 processed_pseudogene Homo_sapiens 7e-29 132
ENST00000492365 KB-1683C8.1-001 processed_pseudogene Homo_sapiens 2e-34 150
ENST00000612648 CTB-75G16.1-001 processed_pseudogene Homo_sapiens 2e-29 134

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