C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000393351 RP5-1106E3.1-001 ENSG00000213296 9606 + 7:124480524-124481395 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonLungMuscleOvaryTestisENST00000393351
Transcript ID Adipose Adrenal Brain Breast Colon Lung Muscle Ovary Testis
ENST00000393351 0.055±0.00 0.150±0.00 0.035±0.00 0.033±0.00 0.147±0.00 0.060±0.00 0.488±0.00 0.042±0.00 0.389±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001OM CIL_0001OM_0001 CGP 7:124030916-124765627

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000170335 Rps2-ps10-002 processed_transcript Mus_musculus 0 797
ENSMUST00000117295 Rps2-ps13-001 processed_pseudogene Mus_musculus 0 797
ENSMUST00000076842 Rps2-ps10-001 transcribed_processed_pseudogene Mus_musculus 0 795
ENSMUST00000170715 Rps2-201 protein_coding Mus_musculus 0 791
ENSMUST00000054289 Rps2-001 protein_coding Mus_musculus 0 791
ENSMUST00000085368 Gm5786-201 protein_coding Mus_musculus 0 780
ENSMUST00000079261 Gm6139-001 processed_pseudogene Mus_musculus 0 774
ENSMUST00000121713 Gm10420-001 processed_pseudogene Mus_musculus 0 758
ENSMUST00000117071 Gm11249-001 processed_pseudogene Mus_musculus 0 747
ENSMUST00000146867 Rps2-002 protein_coding Mus_musculus 0 736
ENSMUST00000071458 Gm4968-001 processed_pseudogene Mus_musculus 0 730
ENSMUST00000186517 RP23-128A11.3-001 processed_pseudogene Mus_musculus 0 728
ENSMUST00000132939 Gm9013-001 processed_pseudogene Mus_musculus 0 728
ENSMUST00000169678 Gm6576-201 protein_coding Mus_musculus 0 726
ENSMUST00000121722 Gm12366-001 processed_pseudogene Mus_musculus 0 723
ENSMUST00000177599 Gm5070-001 processed_pseudogene Mus_musculus 0 723
ENSMUST00000118720 Gm11599-001 processed_pseudogene Mus_musculus 0 721
ENSMUST00000166546 Gm18025-201 protein_coding Mus_musculus 0 719
ENSMUST00000120203 Gm12933-001 processed_pseudogene Mus_musculus 0 713
ENSMUST00000184266 Rps2-ps5-001 processed_pseudogene Mus_musculus 0 701
ENSMUST00000118634 Gm6433-001 processed_pseudogene Mus_musculus 0 691
ENSMUST00000095471 Rps2-ps6-201 protein_coding Mus_musculus 0 691
ENSMUST00000121190 Gm7860-001 processed_pseudogene Mus_musculus 0 689
ENSMUST00000073790 Gm6311-201 pseudogene Mus_musculus 0 665
ENSMUST00000119653 Gm16148-001 processed_pseudogene Mus_musculus 0 656
ENSMUST00000121140 Gm12109-001 processed_pseudogene Mus_musculus 0 616
ENSMUST00000139570 Gm10653-001 transcribed_processed_pseudogene Mus_musculus 0 614
ENSMUST00000156423 Gm10653-003 processed_transcript Mus_musculus 0 614
ENSMUST00000132250 Gm10653-002 processed_transcript Mus_musculus 0 614
ENSMUST00000122167 Gm16061-001 processed_pseudogene Mus_musculus 0 608
ENSMUST00000119247 Gm15653-001 processed_pseudogene Mus_musculus 0 608
ENSMUST00000120626 Gm12922-001 processed_pseudogene Mus_musculus 0 564
ENSMUST00000120476 Gm13559-001 processed_pseudogene Mus_musculus 0 558
ENSMUST00000121348 Gm7638-001 processed_pseudogene Mus_musculus 0 459
ENSMUST00000117941 Gm14276-001 processed_pseudogene Mus_musculus 0 418
ENSMUST00000183369 Gm18014-001 processed_pseudogene Mus_musculus 0 405
ENSMUST00000116032 Gm16073-001 processed_pseudogene Mus_musculus 0 363
ENSMUST00000119539 Gm14234-001 processed_pseudogene Mus_musculus 0 337
ENSMUST00000188013 RP24-467J24.1-001 processed_pseudogene Mus_musculus 0 309
ENSMUST00000122465 Gm12152-001 processed_pseudogene Mus_musculus 0 257
ENSMUST00000132803 Rps2-006 retained_intron Mus_musculus 0 217
ENSMUST00000159341 Gm16138-001 processed_pseudogene Mus_musculus 5e-40 169

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