C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S2 pseudogene 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000479476 RPS2P6-001 ENSG00000214255 9606 + 18:70430231-70431125 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonKidneyLiverLungMuscleOvaryTestisENST00000479476
Transcript ID Adipose Adrenal Breast Colon Kidney Liver Lung Muscle Ovary Testis
ENST00000479476 0.118±0.00 0.189±0.00 0.035±0.00 0.094±0.00 0.102±0.00 0.029±0.00 0.064±0.00 0.191±0.00 0.046±0.00 0.386±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00001A CIL_00001A_0003 CGP 18:70288901-72638521

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000076842 Rps2-ps10-001 transcribed_processed_pseudogene Mus_musculus 0 765
ENSMUST00000170335 Rps2-ps10-002 processed_transcript Mus_musculus 0 765
ENSMUST00000117295 Rps2-ps13-001 processed_pseudogene Mus_musculus 0 765
ENSMUST00000170715 Rps2-201 protein_coding Mus_musculus 0 760
ENSMUST00000054289 Rps2-001 protein_coding Mus_musculus 0 760
ENSMUST00000079261 Gm6139-001 processed_pseudogene Mus_musculus 0 749
ENSMUST00000085368 Gm5786-201 protein_coding Mus_musculus 0 743
ENSMUST00000146867 Rps2-002 protein_coding Mus_musculus 0 723
ENSMUST00000117071 Gm11249-001 processed_pseudogene Mus_musculus 0 721
ENSMUST00000118720 Gm11599-001 processed_pseudogene Mus_musculus 0 719
ENSMUST00000186517 RP23-128A11.3-001 processed_pseudogene Mus_musculus 0 715
ENSMUST00000121713 Gm10420-001 processed_pseudogene Mus_musculus 0 715
ENSMUST00000132939 Gm9013-001 processed_pseudogene Mus_musculus 0 710
ENSMUST00000169678 Gm6576-201 protein_coding Mus_musculus 0 706
ENSMUST00000121722 Gm12366-001 processed_pseudogene Mus_musculus 0 695
ENSMUST00000184266 Rps2-ps5-001 processed_pseudogene Mus_musculus 0 695
ENSMUST00000177599 Gm5070-001 processed_pseudogene Mus_musculus 0 691
ENSMUST00000095471 Rps2-ps6-201 protein_coding Mus_musculus 0 686
ENSMUST00000071458 Gm4968-001 processed_pseudogene Mus_musculus 0 680
ENSMUST00000120203 Gm12933-001 processed_pseudogene Mus_musculus 0 680
ENSMUST00000121190 Gm7860-001 processed_pseudogene Mus_musculus 0 673
ENSMUST00000073790 Gm6311-201 pseudogene Mus_musculus 0 665
ENSMUST00000118634 Gm6433-001 processed_pseudogene Mus_musculus 0 664
ENSMUST00000166546 Gm18025-201 protein_coding Mus_musculus 0 664
ENSMUST00000119653 Gm16148-001 processed_pseudogene Mus_musculus 0 662
ENSMUST00000139570 Gm10653-001 transcribed_processed_pseudogene Mus_musculus 0 608
ENSMUST00000156423 Gm10653-003 processed_transcript Mus_musculus 0 608
ENSMUST00000132250 Gm10653-002 processed_transcript Mus_musculus 0 608
ENSMUST00000121140 Gm12109-001 processed_pseudogene Mus_musculus 0 606
ENSMUST00000122167 Gm16061-001 processed_pseudogene Mus_musculus 0 571
ENSMUST00000119247 Gm15653-001 processed_pseudogene Mus_musculus 0 569
ENSMUST00000120626 Gm12922-001 processed_pseudogene Mus_musculus 0 564
ENSDART00000110842 rps2-201 protein_coding Danio_rerio 0 547
ENSDART00000138107 rps2-001 protein_coding Danio_rerio 0 547
ENSMUST00000120476 Gm13559-001 processed_pseudogene Mus_musculus 0 544
ENSMUST00000121348 Gm7638-001 processed_pseudogene Mus_musculus 0 448
ENSMUST00000116032 Gm16073-001 processed_pseudogene Mus_musculus 0 385
ENSMUST00000117941 Gm14276-001 processed_pseudogene Mus_musculus 0 381
ENSMUST00000119539 Gm14234-001 processed_pseudogene Mus_musculus 0 339
ENSMUST00000188013 RP24-467J24.1-001 processed_pseudogene Mus_musculus 0 255
ENSDART00000141100 rps2-002 protein_coding Danio_rerio 7e-39 165
ENSMUST00000132803 Rps2-006 retained_intron Mus_musculus 7e-34 148
ENSMUST00000159341 Gm16138-001 processed_pseudogene Mus_musculus 2e-30 137
ENSDART00000133878 rps2-003 retained_intron Danio_rerio 1e-16 92

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