C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000612648 CTB-75G16.1-001 ENSG00000274756 9606 - 17:36574462-36575325 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartLiverLungMuscleOvaryPlacentaTestisENST00000612648
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000612648 0.315±0.00 0.571±0.00 0.394±0.00 0.244±0.02 0.225±0.00 0.193±0.03 0.632±0.47 0.077±0.00 0.179±0.00 0.233±0.02 0.137±0.05 0.280±0.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00085R CIL_00085R_0001 VISTA 17:36355391-36956100
CIL_0007YB CIL_0007YB_0001 VISTA 17:36401446-37002205
CIL_0007YB CIL_0007YB_0003 VISTA 17:36402232-37002285
CIL_0005HP CIL_0005HP_0002 CGP 17:36535020-36589848
CIL_0005HQ CIL_0005HQ_0002 CGP 17:36544888-36600806

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000118911 Gm11687-001 processed_pseudogene Mus_musculus 0 776
ENSMUST00000076842 Rps2-ps10-001 transcribed_processed_pseudogene Mus_musculus 0 771
ENSMUST00000170335 Rps2-ps10-002 processed_transcript Mus_musculus 0 771
ENSMUST00000117295 Rps2-ps13-001 processed_pseudogene Mus_musculus 0 771
ENSMUST00000170715 Rps2-201 protein_coding Mus_musculus 0 771
ENSMUST00000054289 Rps2-001 protein_coding Mus_musculus 0 771
ENSMUST00000079261 Gm6139-001 processed_pseudogene Mus_musculus 0 760
ENSMUST00000085368 Gm5786-201 protein_coding Mus_musculus 0 760
ENSMUST00000132939 Gm9013-001 processed_pseudogene Mus_musculus 0 754
ENSMUST00000117071 Gm11249-001 processed_pseudogene Mus_musculus 0 749
ENSMUST00000075898 Gm5921-001 processed_pseudogene Mus_musculus 0 749
ENSMUST00000121713 Gm10420-001 processed_pseudogene Mus_musculus 0 747
ENSMUST00000169678 Gm6576-201 protein_coding Mus_musculus 0 737
ENSMUST00000118720 Gm11599-001 processed_pseudogene Mus_musculus 0 730
ENSMUST00000121722 Gm12366-001 processed_pseudogene Mus_musculus 0 730
ENSMUST00000177599 Gm5070-001 processed_pseudogene Mus_musculus 0 730
ENSMUST00000186517 RP23-128A11.3-001 processed_pseudogene Mus_musculus 0 725
ENSMUST00000184266 Rps2-ps5-001 processed_pseudogene Mus_musculus 0 717
ENSMUST00000120203 Gm12933-001 processed_pseudogene Mus_musculus 0 715
ENSMUST00000146867 Rps2-002 protein_coding Mus_musculus 0 715
ENSMUST00000166546 Gm18025-201 protein_coding Mus_musculus 0 712
ENSMUST00000071458 Gm4968-001 processed_pseudogene Mus_musculus 0 702
ENSMUST00000095471 Rps2-ps6-201 protein_coding Mus_musculus 0 699
ENSMUST00000118634 Gm6433-001 processed_pseudogene Mus_musculus 0 689
ENSMUST00000146791 Gm12091-001 processed_pseudogene Mus_musculus 0 678
ENSMUST00000073790 Gm6311-201 pseudogene Mus_musculus 0 678
ENSMUST00000119653 Gm16148-001 processed_pseudogene Mus_musculus 0 675
ENSMUST00000121140 Gm12109-001 processed_pseudogene Mus_musculus 0 606
ENSMUST00000122167 Gm16061-001 processed_pseudogene Mus_musculus 0 606
ENSMUST00000117512 Gm7222-001 processed_pseudogene Mus_musculus 0 604
ENSMUST00000119247 Gm15653-001 processed_pseudogene Mus_musculus 0 599
ENSMUST00000120476 Gm13559-001 processed_pseudogene Mus_musculus 0 597
ENSMUST00000120626 Gm12922-001 processed_pseudogene Mus_musculus 0 588
ENSMUST00000139570 Gm10653-001 transcribed_processed_pseudogene Mus_musculus 0 582
ENSMUST00000156423 Gm10653-003 processed_transcript Mus_musculus 0 582
ENSMUST00000132250 Gm10653-002 processed_transcript Mus_musculus 0 582
ENSDART00000110842 rps2-201 protein_coding Danio_rerio 0 551
ENSDART00000138107 rps2-001 protein_coding Danio_rerio 0 551
ENSMUST00000183369 Gm18014-001 processed_pseudogene Mus_musculus 0 479
ENSMUST00000121348 Gm7638-001 processed_pseudogene Mus_musculus 0 462
ENSMUST00000117941 Gm14276-001 processed_pseudogene Mus_musculus 0 425
ENSMUST00000165577 Gm17150-001 processed_pseudogene Mus_musculus 0 361
ENSMUST00000188013 RP24-467J24.1-001 processed_pseudogene Mus_musculus 0 324
ENSMUST00000132803 Rps2-006 retained_intron Mus_musculus 0 206
ENSDART00000141100 rps2-002 protein_coding Danio_rerio 8.99634e-43 178
ENSMUST00000159341 Gm16138-001 processed_pseudogene Mus_musculus 2e-29 134
ENSMUST00000117300 Gm15016-001 processed_pseudogene Mus_musculus 2e-23 113
ENSDART00000133878 rps2-003 retained_intron Danio_rerio 1e-21 108

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