C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted pseudogene 6428
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000161062 Gm6428-001 ENSMUSG00000089906 10090 + 1:36601802-36602146 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderPlacentaTestisENSMUST00000161062
Transcript ID Bladder Placenta Testis
ENSMUST00000161062 0.080±0.03 0.029±0.00 2.427±3.76

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002UE CIL_0002UE_0002 CGP 1:36548642-36683183

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000310837 EIF1-003 processed_transcript Homo_sapiens 0 213
ENST00000421436 EIF1P1-001 processed_pseudogene Homo_sapiens 0 374
ENST00000423841 EIF1P3-001 processed_pseudogene Homo_sapiens 0 436
ENST00000428233 EIF1P2-001 processed_pseudogene Homo_sapiens 0 254
ENST00000462917 EIF1-002 retained_intron Homo_sapiens 0 254
ENST00000469257 EIF1-001 protein_coding Homo_sapiens 0 512
ENST00000469308 EIF1-005 processed_transcript Homo_sapiens 0 459
ENST00000482111 EIF1-004 retained_intron Homo_sapiens 0 305
ENST00000487533 EIF1P7-001 processed_pseudogene Homo_sapiens 0 409
ENST00000572664 EIF1P4-001 processed_pseudogene Homo_sapiens 0 346
ENST00000585002 EIF1P5-001 unprocessed_pseudogene Homo_sapiens 4e-26 121
ENST00000586699 EIF1-009 protein_coding Homo_sapiens 0 206
ENST00000591776 EIF1-010 protein_coding Homo_sapiens 0 507

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