C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: eukaryotic translation initiation factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000591776 EIF1-010 ENSG00000173812 9606 + 17:41688887-41691212 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000591776
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000591776 242.232±0.00 171.339±0.00 5.077±0.00 108.802±0.00 91.728±84.96 154.598±148.86 96.534±91.91 155.661±0.00 49.375±40.30 347.892±0.00 275.364±259.73 249.501±225.46 87.758±26.82 155.537±41.65

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000TT CIL_0000TT_0002 CGP 17:41619437-41692668
CIL_0007BG CIL_0007BG_0001 CGP 17:41688885-41715969

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003743 IEA:NAS translation initiation factor activity
GO:0005737 TAS cytoplasm
GO:0006413 IEA translational initiation
GO:0006446 TAS regulation of translational initiation
GO:0006950 NAS response to stress
GO:0008135 TAS translation factor activity, nucleic acid binding
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000049385 Eif1-001 protein_coding Mus_musculus 0 771
ENSMUST00000088313 Emd-002 protein_coding Mus_musculus 0 673
ENSMUST00000178971 Gm6900-001 processed_pseudogene Mus_musculus 0 558
ENSMUST00000139408 Gm10157-001 processed_pseudogene Mus_musculus 0 549
ENSMUST00000179168 Gm16378-001 processed_pseudogene Mus_musculus 0 544
ENSMUST00000119926 Gm14686-001 transcribed_processed_pseudogene Mus_musculus 0 536
ENSMUST00000076828 Gm5265-201 processed_pseudogene Mus_musculus 0 525
ENSMUST00000072732 Gm5471-201 processed_pseudogene Mus_musculus 0 516
ENSMUST00000173735 Gm6155-001 processed_pseudogene Mus_musculus 0 514
ENSMUST00000139846 Eif1-003 processed_transcript Mus_musculus 0 510
ENSMUST00000161062 Gm6428-001 processed_pseudogene Mus_musculus 0 507
ENSMUST00000086606 Eif1-ps1-201 processed_pseudogene Mus_musculus 0 503
ENSMUST00000100019 Gm6913-001 processed_pseudogene Mus_musculus 0 494
ENSMUST00000084813 RP24-208N6.2-001 processed_pseudogene Mus_musculus 0 486
ENSMUST00000121450 Eif1-ps3-001 processed_pseudogene Mus_musculus 0 479
ENSMUST00000159003 Gm16125-001 processed_pseudogene Mus_musculus 0 399
ENSMUST00000152521 Eif1-004 protein_coding Mus_musculus 0 375
ENSMUST00000151513 Eif1-002 protein_coding Mus_musculus 0 364
ENSDART00000009132 eif1b-201 protein_coding Danio_rerio 0 322
ENSDART00000132874 eif1b-001 protein_coding Danio_rerio 0 322
ENSMUST00000132618 Eif1-005 processed_transcript Mus_musculus 0 233
ENSDART00000151383 eif1b-003 retained_intron Danio_rerio 0 213
ENSDART00000151582 eif1b-002 retained_intron Danio_rerio 0 213

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