C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: eukaryotic translation initiation factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000469257 EIF1-001 ENSG00000173812 9606 + 17:41688893-41692668 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartLiverLungMuscleOvaryENST00000469257
Transcript ID Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary
ENST00000469257 1.532±0.00 14.731±4.13 3.210±0.00 1.757±0.00 0.990±0.00 4.555±0.00 3.357±0.00 6.036±0.00 23.237±18.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000TT CIL_0000TT_0002 CGP 17:41619437-41692668
CIL_0007BG CIL_0007BG_0001 CGP 17:41688885-41715969

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003743 NAS:IEA translation initiation factor activity
GO:0005737 TAS cytoplasm
GO:0006413 IEA translational initiation
GO:0006446 TAS regulation of translational initiation
GO:0006950 NAS response to stress
GO:0008135 TAS translation factor activity, nucleic acid binding
GO:0009048 IEA dosage compensation by inactivation of X chromosome
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000049385 Eif1-001 protein_coding Mus_musculus 0 1168
ENSMUST00000088313 Emd-002 protein_coding Mus_musculus 0 953
ENSMUST00000178971 Gm6900-001 processed_pseudogene Mus_musculus 0 560
ENSMUST00000139408 Gm10157-001 processed_pseudogene Mus_musculus 0 555
ENSMUST00000179168 Gm16378-001 processed_pseudogene Mus_musculus 0 549
ENSMUST00000119926 Gm14686-001 transcribed_processed_pseudogene Mus_musculus 0 536
ENSMUST00000132618 Eif1-005 processed_transcript Mus_musculus 0 534
ENSMUST00000076828 Gm5265-201 processed_pseudogene Mus_musculus 0 527
ENSMUST00000072732 Gm5471-201 processed_pseudogene Mus_musculus 0 521
ENSMUST00000173735 Gm6155-001 processed_pseudogene Mus_musculus 0 520
ENSMUST00000161062 Gm6428-001 processed_pseudogene Mus_musculus 0 512
ENSMUST00000139846 Eif1-003 processed_transcript Mus_musculus 0 510
ENSMUST00000086606 Eif1-ps1-201 processed_pseudogene Mus_musculus 0 505
ENSMUST00000100019 Gm6913-001 processed_pseudogene Mus_musculus 0 496
ENSMUST00000084813 RP24-208N6.2-001 processed_pseudogene Mus_musculus 0 486
ENSMUST00000152521 Eif1-004 protein_coding Mus_musculus 0 484
ENSMUST00000121450 Eif1-ps3-001 processed_pseudogene Mus_musculus 0 481
ENSMUST00000159003 Gm16125-001 processed_pseudogene Mus_musculus 0 399
ENSMUST00000151513 Eif1-002 protein_coding Mus_musculus 0 364
ENSDART00000009132 eif1b-201 protein_coding Danio_rerio 0 320
ENSDART00000132874 eif1b-001 protein_coding Danio_rerio 0 320
ENSDART00000151383 eif1b-003 retained_intron Danio_rerio 0 213
ENSDART00000151582 eif1b-002 retained_intron Danio_rerio 0 213

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