C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SMEK homolog 1, suppressor of mek1 (Dictyostelium)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000163095 Smek1-202 ENSMUSG00000041846 10090 - 12:101039409-101083702 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000163095
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000163095 0.682±0.00 1.719±0.11 2.206±0.47 0.887±0.29 1.819±0.00 0.747±0.00 1.331±0.08 2.146±0.32 0.844±0.00 0.741±0.15 4.399±0.05 2.554±0.00 1.406±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000AE CIL_0000AE_0002 CGP 12:100912700-101083702
CIL_0000AH CIL_0000AH_0002 CGP 12:101039409-101626009

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006470 IMP protein dephosphorylation
GO:0030289 IDA protein phosphatase 4 complex
GO:0045722 IDA positive regulation of gluconeogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000554308 SMEK1-005 nonsense_mediated_decay Homo_sapiens 0 1882
ENST00000554390 SMEK1-002 non_stop_decay Homo_sapiens 0 2148
ENST00000554511 SMEK1-010 protein_coding Homo_sapiens 0 484
ENST00000554574 SMEK1-008 retained_intron Homo_sapiens 0 1232
ENST00000554684 SMEK1-001 protein_coding Homo_sapiens 0 3358
ENST00000554943 SMEK1-007 protein_coding Homo_sapiens 0 4710
ENST00000555029 SMEK1-011 protein_coding Homo_sapiens 0 658
ENST00000555462 SMEK1-003 protein_coding Homo_sapiens 0 3203
ENST00000555470 SMEK1-012 protein_coding Homo_sapiens 0 579
ENST00000555718 SMEK1-013 processed_transcript Homo_sapiens 0 929
ENST00000557018 SMEK1-009 protein_coding Homo_sapiens 0 697
ENST00000557382 SMEK1-014 retained_intron Homo_sapiens 0 1024

Loading