C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin A-52 residue ribosomal protein fusion product 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000165126 Uba52-201 ENSMUSG00000090137 10090 - 8:70508332-70509623 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENSMUST00000165126
Transcript ID Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENSMUST00000165126 801.747±258.38 1228.017±166.48 417.154±25.28 689.021±8.18 445.219±43.67 324.891±34.70 987.072±394.13 1049.402±849.14 99.401±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005654 TAS nucleoplasm
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0006412 IEA translation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000035235 UBC-001 protein_coding Danio_rerio 0 292
ENSDART00000123908 UBC-201 protein_coding Danio_rerio 0 281
ENSDART00000099105 ubc-001 protein_coding Danio_rerio 0 270
ENSDART00000097583 ubb-001 protein_coding Danio_rerio 0 270
ENST00000339647 UBC-001 protein_coding Homo_sapiens 0 303
ENST00000408928 AC099535.4-001 processed_pseudogene Homo_sapiens 0 398
ENST00000461723 UBA52P5-001 processed_pseudogene Homo_sapiens 0 196
ENST00000535131 UBC-015 protein_coding Homo_sapiens 0 303
ENST00000535859 UBC-013 protein_coding Homo_sapiens 0 303
ENST00000536661 UBC-010 processed_transcript Homo_sapiens 0 244
ENST00000536769 UBC-007 protein_coding Homo_sapiens 0 303
ENST00000538617 UBC-003 protein_coding Homo_sapiens 0 303
ENST00000540351 UBC-009 protein_coding Homo_sapiens 0 303
ENST00000540700 UBC-011 protein_coding Homo_sapiens 0 303
ENST00000541272 UBC-016 protein_coding Homo_sapiens 0 303
ENST00000541645 UBC-014 protein_coding Homo_sapiens 0 303
ENST00000542416 UBC-008 protein_coding Homo_sapiens 0 254
ENST00000544481 UBC-017 processed_transcript Homo_sapiens 0 294
ENST00000546120 UBC-201 protein_coding Homo_sapiens 0 303
ENST00000546271 UBC-012 protein_coding Homo_sapiens 0 303

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