C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polypyrimidine tract binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000169580 Ptbp1-006 ENSMUSG00000006498 10090 + 10:79862017-79864432 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastHeartMuscleOvaryENSMUST00000169580
Transcript ID Breast Heart Muscle Ovary
ENSMUST00000169580 9.383±0.00 3.331±0.00 1.722±0.41 34.020±3.90

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008XG CIL_0008XG_0002 VISTA 10:79539861-80142369
CIL_00051Q CIL_00051Q_0002 CGP 10:79821021-79864771
CIL_00008B CIL_00008B_0002 CGP 10:79854427-79874634

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000349038 PTBP1-003 protein_coding Homo_sapiens 0 758
ENST00000350092 PTBP1-019 protein_coding Homo_sapiens 0 758
ENST00000356948 PTBP1-001 protein_coding Homo_sapiens 0 758
ENST00000394601 PTBP1-002 protein_coding Homo_sapiens 0 758
ENST00000554374 PTBP1P-001 processed_pseudogene Homo_sapiens 0 507
ENST00000585856 PTBP1-007 retained_intron Homo_sapiens 0 767
ENST00000585932 PTBP1-014 nonsense_mediated_decay Homo_sapiens 0 760
ENST00000585956 PTBP1-016 protein_coding Homo_sapiens 0 220
ENST00000586944 PTBP1-004 retained_intron Homo_sapiens 0 758
ENST00000587191 PTBP1-017 protein_coding Homo_sapiens 0 401
ENST00000621737 PTBP1-015 nonsense_mediated_decay Homo_sapiens 0 577

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