C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polypyrimidine tract binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000394601 PTBP1-002 ENSG00000011304 9606 + 19:797452-812312 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000394601
Transcript ID Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000394601 4.374±0.00 5.918±3.07 3.819±0.00 22.678±0.00 5.089±3.73 27.583±0.00 5.893±4.48 20.597±11.96 15.509±2.33 11.335±7.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008XG CIL_0008XG_0001 VISTA 19:477571-1083531
CIL_00051Q CIL_00051Q_0001 CGP 19:751126-812327
CIL_00008B CIL_00008B_0001 CGP 19:797075-821977

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000381 IDA regulation of alternative mRNA splicing, via spliceosome
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003723 TAS:IEA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005730 TAS nucleolus
GO:0006397 TAS:IEA mRNA processing
GO:0008187 TAS poly-pyrimidine tract binding
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0033119 IDA negative regulation of RNA splicing
GO:0036002 IDA pre-mRNA binding
GO:0044822 IDA poly(A) RNA binding
GO:0048025 IDA negative regulation of mRNA splicing, via spliceosome
GO:0051148 IDA negative regulation of muscle cell differentiation
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000172282 Ptbp1-001 protein_coding Mus_musculus 0 1941
ENSMUST00000165153 Ptbp1-004 retained_intron Mus_musculus 0 1251
ENSMUST00000057343 Ptbp1-008 nonsense_mediated_decay Mus_musculus 0 1055
ENSMUST00000165704 Ptbp1-002 protein_coding Mus_musculus 0 1055
ENSMUST00000095457 Ptbp1-005 protein_coding Mus_musculus 0 898
ENSMUST00000171216 Ptbp1-016 retained_intron Mus_musculus 0 857
ENSMUST00000169580 Ptbp1-006 retained_intron Mus_musculus 0 758
ENSMUST00000168988 Ptbp1-013 retained_intron Mus_musculus 0 691
ENSMUST00000099958 Ptbp1-009 processed_transcript Mus_musculus 0 608
ENSMUST00000164385 Ptbp1-018 retained_intron Mus_musculus 0 514
ENSMUST00000165724 Ptbp1-017 nonsense_mediated_decay Mus_musculus 0 460
ENSDART00000040308 ptbp3-201 protein_coding Danio_rerio 0 300
ENSDART00000146727 ptbp3-001 protein_coding Danio_rerio 0 300
ENSMUST00000169091 Ptbp1-015 protein_coding Mus_musculus 0 294
ENSMUST00000169483 Ptbp1-012 nonsense_mediated_decay Mus_musculus 0 248

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