C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polypyrimidine tract binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000585932 PTBP1-014 ENSG00000011304 9606 + 19:805096-811016 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastColonHeartKidneyLiverOvaryENST00000585932
Transcript ID Bladder Breast Colon Heart Kidney Liver Ovary
ENST00000585932 2.773±0.00 6.691±0.00 9.175±0.00 1.567±0.00 4.934±0.00 4.296±0.00 11.796±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008XG CIL_0008XG_0001 VISTA 19:477571-1083531
CIL_00051Q CIL_00051Q_0001 CGP 19:751126-812327
CIL_00008B CIL_00008B_0001 CGP 19:797075-821977

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000057343 Ptbp1-008 nonsense_mediated_decay Mus_musculus 0 841
ENSMUST00000169580 Ptbp1-006 retained_intron Mus_musculus 0 760
ENSMUST00000095457 Ptbp1-005 protein_coding Mus_musculus 0 758
ENSMUST00000165153 Ptbp1-004 retained_intron Mus_musculus 0 758
ENSMUST00000165704 Ptbp1-002 protein_coding Mus_musculus 0 758
ENSMUST00000172282 Ptbp1-001 protein_coding Mus_musculus 0 758
ENSMUST00000165724 Ptbp1-017 nonsense_mediated_decay Mus_musculus 0 723
ENSMUST00000164385 Ptbp1-018 retained_intron Mus_musculus 0 455

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