C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polypyrimidine tract binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000350092 PTBP1-019 ENSG00000011304 9606 + 19:799406-812222 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainColonHeartKidneyLiverLungOvaryPlacentaENST00000350092
Transcript ID Adipose Adrenal Bladder Brain Colon Heart Kidney Liver Lung Ovary Placenta
ENST00000350092 16.857±0.00 23.782±0.00 1.261±0.00 0.426±0.00 3.112±0.00 1.532±1.37 2.402±0.00 4.648±0.00 2.474±0.00 15.476±9.46 34.377±4.58

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008XG CIL_0008XG_0001 VISTA 19:477571-1083531
CIL_00051Q CIL_00051Q_0001 CGP 19:751126-812327
CIL_00008B CIL_00008B_0001 CGP 19:797075-821977

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0005634 IEA nucleus
GO:0006397 IEA mRNA processing

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000172282 Ptbp1-001 protein_coding Mus_musculus 0 1975
ENSMUST00000165153 Ptbp1-004 retained_intron Mus_musculus 0 1347
ENSMUST00000057343 Ptbp1-008 nonsense_mediated_decay Mus_musculus 0 985
ENSMUST00000165704 Ptbp1-002 protein_coding Mus_musculus 0 985
ENSMUST00000095457 Ptbp1-005 protein_coding Mus_musculus 0 898
ENSMUST00000171216 Ptbp1-016 retained_intron Mus_musculus 0 863
ENSMUST00000169580 Ptbp1-006 retained_intron Mus_musculus 0 758
ENSMUST00000168988 Ptbp1-013 retained_intron Mus_musculus 0 691
ENSMUST00000099958 Ptbp1-009 processed_transcript Mus_musculus 0 608
ENSMUST00000164385 Ptbp1-018 retained_intron Mus_musculus 0 514
ENSMUST00000165724 Ptbp1-017 nonsense_mediated_decay Mus_musculus 0 479
ENSDART00000040308 ptbp3-201 protein_coding Danio_rerio 0 303
ENSDART00000146727 ptbp3-001 protein_coding Danio_rerio 0 303
ENSMUST00000169091 Ptbp1-015 protein_coding Mus_musculus 0 294
ENSMUST00000169483 Ptbp1-012 nonsense_mediated_decay Mus_musculus 0 248

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