C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00008B_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000011304-ENSG00000129951 CGP 9606 19:797075-821977
GeneTranscriptPositionBiotype
ENSG00000011304 (PTBP1)
polypyrimidine tract binding protein 1 		ENST00000349038 (PTBP1-003) 797425-812312 protein_coding
ENST00000350092 (PTBP1-019) 799406-812222 protein_coding
ENST00000356948 (PTBP1-001) 797075-812327 protein_coding
ENST00000394601 (PTBP1-002) 797452-812312 protein_coding
ENST00000585535 (PTBP1-011) 803577-808730 protein_coding
ENST00000585856 (PTBP1-007) 807859-811021 retained_intron
ENST00000585932 (PTBP1-014) 805096-811016 nonsense_mediated_decay
ENST00000585956 (PTBP1-016) 804623-808646 protein_coding
ENST00000586481 (PTBP1-013) 797427-804634 protein_coding
ENST00000586944 (PTBP1-004) 797428-811289 retained_intron
ENST00000587094 (PTBP1-012) 798428-804083 protein_coding
ENST00000587136 (PTBP1-008) 804858-806660 retained_intron
ENST00000587191 (PTBP1-017) 797490-808762 protein_coding
ENST00000589575 (PTBP1-006) 797462-805017 protein_coding
ENST00000589883 (PTBP1-009) 805508-807028 retained_intron
ENST00000590887 (PTBP1-005) 797425-804582 retained_intron
ENST00000592113 (PTBP1-018) 803575-806045 retained_intron
ENST00000592804 (PTBP1-010) 804918-806036 retained_intron
ENST00000621737 (PTBP1-015) 804389-810774 nonsense_mediated_decay
ENSG00000129951 (LPPR3)
Lipid phosphate phosphatase-related protein type 3 		ENST00000359894 (LPPR3-002) 812488-821952 protein_coding
ENST00000517665 (LPPR3-005) 813756-814911 protein_coding
ENST00000519502 (LPPR3-003) 815203-821955 protein_coding
ENST00000520876 (LPPR3-001) 812488-821977 protein_coding

Homo sapiens Ensembl (GRCh38)

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CIL_00008B_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000006498-ENSMUSG00000035835 CGP 10090 10:79854427-79874634
GeneTranscriptPositionBiotype
ENSMUSG00000006498 (Ptbp1)
polypyrimidine tract binding protein 1 		ENSMUST00000057343 (Ptbp1-008) 79854652-79863424 nonsense_mediated_decay
ENSMUST00000095457 (Ptbp1-005) 79854668-79864359 protein_coding
ENSMUST00000099958 (Ptbp1-009) 79854641-79859613 processed_transcript
ENSMUST00000164385 (Ptbp1-018) 79861738-79863050 retained_intron
ENSMUST00000165153 (Ptbp1-004) 79854633-79863818 retained_intron
ENSMUST00000165704 (Ptbp1-002) 79854629-79864771 protein_coding
ENSMUST00000165724 (Ptbp1-017) 79859650-79863053 nonsense_mediated_decay
ENSMUST00000168216 (Ptbp1-011) 79854667-79859044 processed_transcript
ENSMUST00000168683 (Ptbp1-014) 79855038-79859096 protein_coding
ENSMUST00000168988 (Ptbp1-013) 79854605-79859712 retained_intron
ENSMUST00000169091 (Ptbp1-015) 79858772-79859387 protein_coding
ENSMUST00000169483 (Ptbp1-012) 79854667-79859364 nonsense_mediated_decay
ENSMUST00000169580 (Ptbp1-006) 79862017-79864432 retained_intron
ENSMUST00000171216 (Ptbp1-016) 79858994-79860125 retained_intron
ENSMUST00000171599 (Ptbp1-010) 79854665-79859014 protein_coding
ENSMUST00000172282 (Ptbp1-001) 79854427-79864432 protein_coding
ENSMUSG00000035835 (BC005764)
lipid phosphate phosphatase-related protein type 3 		ENSMUST00000092325 (BC005764-001) 79864781-79874634 protein_coding
ENSMUST00000113452 (BC005764-003) 79864781-79874366 retained_intron
ENSMUST00000163111 (BC005764-006) 79866854-79874389 processed_transcript
ENSMUST00000165601 (BC005764-005) 79866438-79874408 protein_coding
ENSMUST00000166023 (BC005764-008) 79867459-79874370 protein_coding
ENSMUST00000166057 (BC005764-004) 79864781-79874570 retained_intron
ENSMUST00000167250 (BC005764-002) 79860475-79874570 protein_coding
ENSMUST00000167707 (BC005764-007) 79866908-79874399 protein_coding
ENSMUST00000167897 (BC005764-009) 79866432-79874224 protein_coding
ENSMUST00000170910 (BC005764-010) 79866412-79867281 retained_intron
ENSMUSG00000057729 (Prtn3)
proteinase 3 		ENSMUST00000006679 (Prtn3-001) 79879614-79883174 protein_coding
ENSMUST00000163188 (Prtn3-004) 79874476-79883041 processed_transcript
ENSMUST00000164134 (Prtn3-003) 79881004-79882389 retained_intron
ENSMUST00000165982 (Prtn3-002) 79880980-79883174 retained_intron
ENSMUST00000166201 (Prtn3-005) 79881042-79882844 protein_coding
ENSMUST00000171489 (Prtn3-006) 79881783-79882880 retained_intron
ENSMUSG00000090860 (Gm17134)
predicted gene 17134 		ENSMUST00000166593 (Gm17134-001) 79863937-79864434 antisense
ENSMUSG00000091994 (E130317F20Rik)
RIKEN cDNA E130317F20 gene 		ENSMUST00000168521 (E130317F20Rik-001) 79851381-79854956 processed_transcript

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00008B_0001ENSG00000011304ENST00000349038ENST00000350092ENST00000356948ENST00000394601ENST00000585535ENST00000585856ENST00000585932ENST00000585956ENST00000586481ENST00000586944ENST00000587094ENST00000587136ENST00000587191ENST00000589575ENST00000589883ENST00000590887ENST00000592113ENST00000592804ENST00000621737ENSG00000129951ENST00000359894ENST00000517665ENST00000519502ENST00000520876CIL_00008B_0002ENSMUSG00000006498ENSMUST00000057343ENSMUST00000095457ENSMUST00000099958ENSMUST00000164385ENSMUST00000165153ENSMUST00000165704ENSMUST00000165724ENSMUST00000168216ENSMUST00000168683ENSMUST00000168988ENSMUST00000169091ENSMUST00000169483ENSMUST00000169580ENSMUST00000171216ENSMUST00000171599ENSMUST00000172282ENSMUSG00000035835ENSMUST00000092325ENSMUST00000113452ENSMUST00000163111ENSMUST00000165601ENSMUST00000166023ENSMUST00000166057ENSMUST00000167250ENSMUST00000167707ENSMUST00000167897ENSMUST00000170910ENSMUSG00000057729ENSMUST00000006679ENSMUST00000163188ENSMUST00000164134ENSMUST00000165982ENSMUST00000166201ENSMUST00000171489ENSMUSG00000090860ENSMUST00000166593ENSMUSG00000091994ENSMUST00000168521
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00008B_0001ENSG00000011304ENST00000349038ENST00000350092ENST00000356948ENST00000394601ENST00000585856ENST00000585932ENST00000586944ENST00000587191ENST00000589575ENST00000589883ENST00000621737ENSG00000129951ENST00000359894ENST00000517665ENST00000519502ENST00000520876CIL_00008B_0002ENSMUSG00000006498ENSMUST00000057343ENSMUST00000095457ENSMUST00000165153ENSMUST00000165704ENSMUST00000165724ENSMUST00000169580ENSMUST00000171216ENSMUST00000172282ENSMUSG00000035835ENSMUST00000092325ENSMUST00000113452ENSMUST00000165601ENSMUST00000166057ENSMUST00000167250ENSMUSG00000057729ENSMUST00000006679ENSMUSG00000090860ENSMUST00000166593ENSMUSG00000091994ENSMUST00000168521
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000011304 ENST00000349038 39.647±0.00 34.454±0.00 1.344±0.00 5.321±3.98 17.582±14.96 24.076±0.00 7.966±0.00 16.672±14.89 7.833±5.84 41.578±0.00 3.656±0.00 28.508±11.19 42.731±8.38 21.610±10.13
ENST00000350092 16.857±0.00 23.782±0.00 1.261±0.00 0.426±0.00 N/A 3.112±0.00 1.532±1.37 2.402±0.00 4.648±0.00 2.474±0.00 N/A 15.476±9.46 34.377±4.58 N/A
ENST00000356948 N/A N/A N/A N/A N/A N/A 0.238±0.00 N/A N/A N/A N/A 14.379±0.00 N/A N/A
ENST00000394601 N/A N/A N/A N/A 4.374±0.00 5.918±3.07 3.819±0.00 22.678±0.00 5.089±3.73 27.583±0.00 5.893±4.48 20.597±11.96 15.509±2.33 11.335±7.00
ENST00000585535 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000585856 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.223±0.00 N/A N/A N/A N/A
ENST00000585932 N/A N/A 2.773±0.00 N/A 6.691±0.00 9.175±0.00 1.567±0.00 4.934±0.00 4.296±0.00 N/A N/A 11.796±0.00 N/A N/A
ENST00000585956 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586481 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586944 N/A N/A 0.727±0.00 2.034±0.00 1.103±0.00 N/A 0.105±0.00 0.889±0.00 0.887±0.00 0.851±0.00 N/A N/A N/A 3.199±0.00
ENST00000587094 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587136 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587191 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 115.126±0.00 116.533±0.00 42.499±0.00
ENST00000589575 N/A N/A N/A 1.260±0.00 N/A N/A 0.668±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000589883 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.114±0.00 N/A N/A N/A
ENST00000590887 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592113 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592804 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000621737 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.366±0.00 N/A 32.597±0.00 N/A 12.240±0.00
ENSG00000129951 ENST00000359894 N/A N/A N/A 1.053±0.00 N/A N/A 0.153±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000517665 N/A N/A N/A 3.572±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519502 N/A 0.154±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.054±0.00 N/A
ENST00000520876 0.063±0.00 N/A N/A 3.953±1.72 0.366±0.00 0.125±0.00 N/A 0.112±0.00 0.023±0.00 9.577±0.00 N/A 2.326±2.90 0.075±0.00 2.229±1.37
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000006498 ENSMUST00000057343 N/A N/A 21.296±0.28 N/A N/A N/A N/A N/A 41.087±8.69 N/A N/A N/A 23.764±9.91 N/A
ENSMUST00000095457 21.636±0.00 20.585±4.54 12.957±1.04 N/A 21.177±8.12 25.892±10.40 4.854±1.35 20.345±6.41 26.479±15.02 20.001±0.55 1.708±0.25 36.874±8.95 41.258±29.86 6.653±1.98
ENSMUST00000099958 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000164385 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000165153 N/A 15.748±0.91 19.134±0.00 N/A N/A 23.512±5.67 N/A N/A 23.110±16.73 N/A 1.486±0.00 38.047±5.13 61.018±26.19 N/A
ENSMUST00000165704 27.173±5.73 21.068±4.37 N/A N/A 14.440±0.64 20.334±2.35 3.934±0.00 20.014±4.68 7.806±0.53 26.672±5.50 N/A 45.166±7.70 N/A 10.284±0.00
ENSMUST00000165724 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 100.600±0.00 60.461±30.23 12.852±0.00
ENSMUST00000168216 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000168683 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000168988 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000169091 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000169483 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000169580 N/A N/A N/A N/A 9.383±0.00 N/A 3.331±0.00 N/A N/A N/A 1.722±0.41 34.020±3.90 N/A N/A
ENSMUST00000171216 110.145±0.08 N/A N/A N/A 20.252±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000171599 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000172282 32.507±4.87 37.468±10.61 18.876±2.24 N/A 21.429±8.52 23.584±3.90 5.143±1.40 24.652±1.95 24.920±12.45 25.099±3.29 2.187±0.73 40.644±13.89 39.517±2.28 19.947±0.85
ENSMUSG00000035835 ENSMUST00000092325 N/A N/A N/A 55.380±32.95 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000113452 N/A N/A N/A 73.623±42.29 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000163111 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000165601 N/A N/A N/A 260.697±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000166023 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000166057 N/A N/A N/A 164.765±74.51 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000167250 N/A N/A N/A N/A 11.848±0.89 9.671±1.01 N/A N/A N/A N/A N/A 23.594±3.13 N/A N/A
ENSMUST00000167707 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000167897 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000170910 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000057729 ENSMUST00000006679 N/A N/A N/A N/A N/A N/A N/A N/A 134.334±20.12 N/A N/A N/A N/A N/A
ENSMUST00000163188 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000164134 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000165982 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000166201 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000171489 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000090860 ENSMUST00000166593 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 158.461±0.00 116.151±49.31 43.886±0.00
ENSMUSG00000091994 ENSMUST00000168521 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.322±0.31 N/A N/A 7.805±2.92

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