C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polypyrimidine tract binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000586944 PTBP1-004 ENSG00000011304 9606 + 19:797428-811289 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastHeartKidneyLiverLungTestisENST00000586944
Transcript ID Bladder Brain Breast Heart Kidney Liver Lung Testis
ENST00000586944 0.727±0.00 2.034±0.00 1.103±0.00 0.105±0.00 0.889±0.00 0.887±0.00 0.851±0.00 3.199±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008XG CIL_0008XG_0001 VISTA 19:477571-1083531
CIL_00051Q CIL_00051Q_0001 CGP 19:751126-812327
CIL_00008B CIL_00008B_0001 CGP 19:797075-821977

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000172282 Ptbp1-001 protein_coding Mus_musculus 0 1090
ENSMUST00000165704 Ptbp1-002 protein_coding Mus_musculus 0 1088
ENSMUST00000057343 Ptbp1-008 nonsense_mediated_decay Mus_musculus 0 1074
ENSMUST00000164385 Ptbp1-018 retained_intron Mus_musculus 0 900
ENSMUST00000171216 Ptbp1-016 retained_intron Mus_musculus 0 859
ENSMUST00000095457 Ptbp1-005 protein_coding Mus_musculus 0 817
ENSMUST00000165153 Ptbp1-004 retained_intron Mus_musculus 0 817
ENSMUST00000169580 Ptbp1-006 retained_intron Mus_musculus 0 758
ENSMUST00000168988 Ptbp1-013 retained_intron Mus_musculus 0 691
ENSMUST00000099958 Ptbp1-009 processed_transcript Mus_musculus 0 608
ENSMUST00000165724 Ptbp1-017 nonsense_mediated_decay Mus_musculus 0 460
ENSDART00000040308 ptbp3-201 protein_coding Danio_rerio 0 300
ENSDART00000146727 ptbp3-001 protein_coding Danio_rerio 0 300
ENSMUST00000169091 Ptbp1-015 protein_coding Mus_musculus 0 294
ENSMUST00000169483 Ptbp1-012 nonsense_mediated_decay Mus_musculus 0 248
ENSMUST00000167250 BC005764-002 protein_coding Mus_musculus 8.40779e-45 187

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