C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polypyrimidine tract binding protein 1 pseudogene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000554374 PTBP1P-001 ENSG00000259078 9606 + 14:65279267-65281166 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonLungOvaryPlacentaTestisENST00000554374
Transcript ID Adrenal Breast Colon Lung Ovary Placenta Testis
ENST00000554374 0.136±0.00 0.095±0.00 0.033±0.00 0.070±0.00 0.246±0.11 0.046±0.00 0.059±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001PC CIL_0001PC_0001 CGP 14:65006174-65744121

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000165704 Ptbp1-002 protein_coding Mus_musculus 0 1399
ENSMUST00000095457 Ptbp1-005 protein_coding Mus_musculus 0 1216
ENSMUST00000057343 Ptbp1-008 nonsense_mediated_decay Mus_musculus 0 863
ENSMUST00000172282 Ptbp1-001 protein_coding Mus_musculus 0 815
ENSMUST00000171216 Ptbp1-016 retained_intron Mus_musculus 0 671
ENSMUST00000165153 Ptbp1-004 retained_intron Mus_musculus 0 592
ENSMUST00000168988 Ptbp1-013 retained_intron Mus_musculus 0 558
ENSMUST00000099958 Ptbp1-009 processed_transcript Mus_musculus 0 518
ENSMUST00000169580 Ptbp1-006 retained_intron Mus_musculus 0 507
ENSMUST00000164385 Ptbp1-018 retained_intron Mus_musculus 0 412
ENSMUST00000165724 Ptbp1-017 nonsense_mediated_decay Mus_musculus 0 385
ENSMUST00000169091 Ptbp1-015 protein_coding Mus_musculus 0 261
ENSMUST00000169483 Ptbp1-012 nonsense_mediated_decay Mus_musculus 0 224

Loading