C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptotagmin binding, cytoplasmic RNA interacting protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000172828 Syncrip-005 ENSMUSG00000032423 10090 - 9:88453938-88482149 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainMuscleOvaryPlacentaTestisENSMUST00000172828
Transcript ID Brain Muscle Ovary Placenta Testis
ENSMUST00000172828 31.428±0.00 5.518±0.80 36.811±24.67 49.299±33.35 68.909±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007K0 CIL_0007K0_0002 UCNEbase 9:87376892-88455782
CIL_0007TL CIL_0007TL_0002 VISTA 9:87895357-88499255
CIL_0005XI CIL_0005XI_0002 CGP 9:88376750-88456616
CIL_0005XJ CIL_0005XJ_0002 CGP 9:88407432-88482574

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 IDA cytoplasm
GO:0008143 IDA poly(A) binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000355238 SYNCRIP-002 protein_coding Homo_sapiens 0 2850
ENST00000369622 SYNCRIP-001 protein_coding Homo_sapiens 0 2278
ENST00000434910 RP4-775C13.1-001 processed_pseudogene Homo_sapiens 0 2183
ENST00000444272 SYNCRIP-003 protein_coding Homo_sapiens 0 525
ENST00000503906 RP11-321N4.5-001 nonsense_mediated_decay Homo_sapiens 0 604
ENST00000616122 SYNCRIP-201 protein_coding Homo_sapiens 0 2953

Loading