C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002S7_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000142444-ENSG00000127616 CGP 9606 19:10928733-11065395
GeneTranscriptPositionBiotype
ENSG00000127616 (SMARCA4)
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 		ENST00000344626 (SMARCA4-001) 10961001-11062059 protein_coding
ENST00000413806 (SMARCA4-201) 10984152-11062282 protein_coding
ENST00000429416 (SMARCA4-007) 10961001-11062282 protein_coding
ENST00000444061 (SMARCA4-003) 10961110-11061816 protein_coding
ENST00000450717 (SMARCA4-202) 10984152-11062282 protein_coding
ENST00000538456 (SMARCA4-006) 11033436-11041560 processed_transcript
ENST00000541122 (SMARCA4-005) 10961081-11061816 protein_coding
ENST00000585799 (SMARCA4-011) 11020581-11062276 retained_intron
ENST00000586122 (SMARCA4-016) 11018312-11023588 processed_transcript
ENST00000586892 (SMARCA4-013) 11033082-11034146 retained_intron
ENST00000586921 (SMARCA4-014) 11060461-11062269 processed_transcript
ENST00000586985 (SMARCA4-015) 11058835-11065395 protein_coding
ENST00000587988 (SMARCA4-012) 11018870-11023561 retained_intron
ENST00000589677 (SMARCA4-004) 10961105-11061816 protein_coding
ENST00000590574 (SMARCA4-002) 10961321-11061816 protein_coding
ENST00000591545 (SMARCA4-009) 10984278-11032666 retained_intron
ENST00000591595 (SMARCA4-010) 11019014-11062276 retained_intron
ENST00000592158 (SMARCA4-018) 11030813-11041466 protein_coding
ENST00000592604 (SMARCA4-008) 11012762-11061989 retained_intron
ENSG00000142444 (C19orf52)
chromosome 19 open reading frame 52 		ENST00000270502 (C19orf52-001) 10928733-10930254 protein_coding
ENST00000588807 (C19orf52-002) 10929621-10933515 nonsense_mediated_decay
ENST00000593162 (C19orf52-003) 10932068-10933535 processed_transcript
ENSG00000266936 (CTC-215O4.4)
 ENST00000587831 (CTC-215O4.4-001) 11010917-11016011 antisense
ENSG00000276757 (Metazoa_SRP)
Metazoan signal recognition particle RNA 		ENST00000584303 (Metazoa_SRP.1-388) 11011708-11012006 misc_RNA

Homo sapiens Ensembl (GRCh38)

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CIL_0002S7_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000048429-ENSMUSG00000032187 CGP 10090 9:21592722-21704230
GeneTranscriptPositionBiotype
ENSMUSG00000032182 (Yipf2)
Yip1 domain family, member 2 		ENSMUST00000034700 (Yipf2-201) 21588709-21592831 protein_coding
ENSMUST00000078572 (Yipf2-202) 21588709-21592831 protein_coding
ENSMUST00000180365 (Yipf2-203) 21588709-21592831 protein_coding
ENSMUSG00000032187 (Smarca4)
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 		ENSMUST00000034707 (Smarca4-001) 21616169-21704217 protein_coding
ENSMUST00000098948 (Smarca4-201) 21616169-21704230 protein_coding
ENSMUST00000172996 (Smarca4-002) 21635767-21686228 protein_coding
ENSMUST00000174008 (Smarca4-003) 21616264-21703366 protein_coding
ENSMUSG00000048429 (1810026J23Rik)
RIKEN cDNA 1810026J23 gene 		ENSMUST00000062125 (1810026J23Rik-001) 21592722-21595970 protein_coding
ENSMUSG00000088478 (Mir1946b)
microRNA 1946b 		ENSMUST00000157853 (Mir1946b-201) 21613444-21613576 miRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002S7_0001ENSG00000127616ENST00000344626ENST00000413806ENST00000429416ENST00000444061ENST00000450717ENST00000538456ENST00000541122ENST00000585799ENST00000586122ENST00000586892ENST00000586921ENST00000586985ENST00000587988ENST00000589677ENST00000590574ENST00000591545ENST00000591595ENST00000592158ENST00000592604ENSG00000142444ENST00000270502ENST00000588807ENST00000593162ENSG00000266936ENST00000587831ENSG00000276757ENST00000584303CIL_0002S7_0002ENSMUSG00000032182ENSMUST00000034700ENSMUST00000078572ENSMUST00000180365ENSMUSG00000032187ENSMUST00000034707ENSMUST00000098948ENSMUST00000172996ENSMUST00000174008ENSMUSG00000048429ENSMUST00000062125ENSMUSG00000088478ENSMUST00000157853
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002S7_0001ENSG00000127616ENST00000344626ENST00000429416ENST00000444061ENST00000450717ENST00000538456ENST00000585799ENST00000586921ENST00000590574ENST00000591545ENST00000591595ENST00000592604ENSG00000142444ENST00000270502ENST00000588807ENST00000593162ENSG00000266936ENST00000587831ENSG00000276757ENST00000584303CIL_0002S7_0002ENSMUSG00000032182ENSMUST00000034700ENSMUST00000078572ENSMUST00000180365ENSMUSG00000032187ENSMUST00000034707ENSMUST00000098948ENSMUST00000172996ENSMUST00000174008ENSMUSG00000048429ENSMUST00000062125ENSMUSG00000088478ENSMUST00000157853
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000127616 ENST00000344626 10.862±0.00 6.423±0.00 1.791±0.00 6.590±5.69 2.203±1.19 4.419±0.00 3.884±0.00 N/A 0.575±0.00 3.653±0.00 8.669±0.00 13.375±9.53 10.673±7.74 20.880±5.67
ENST00000413806 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000429416 N/A N/A N/A N/A N/A N/A 0.507±0.00 N/A N/A 3.296±0.00 N/A N/A N/A N/A
ENST00000444061 6.389±0.00 7.412±0.00 1.360±0.00 12.243±0.00 4.446±1.23 2.900±0.26 2.389±2.13 7.684±0.00 N/A 3.969±1.43 3.278±2.61 9.163±5.43 9.895±5.36 17.482±2.60
ENST00000450717 N/A N/A N/A N/A N/A N/A 2.188±0.00 N/A 2.373±0.00 N/A N/A 5.776±4.45 N/A 14.446±0.00
ENST00000538456 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 71.046±0.00 N/A N/A
ENST00000541122 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000585799 N/A N/A N/A N/A N/A N/A 0.434±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000586122 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586892 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586921 N/A N/A N/A N/A N/A N/A N/A 29.852±0.00 N/A N/A N/A N/A N/A N/A
ENST00000586985 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587988 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589677 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590574 N/A N/A N/A 1.060±0.00 N/A N/A N/A 0.801±0.00 N/A N/A N/A N/A N/A N/A
ENST00000591545 N/A N/A N/A N/A N/A N/A N/A N/A 0.720±0.00 N/A N/A N/A N/A N/A
ENST00000591595 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 18.485±0.00 N/A N/A
ENST00000592158 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592604 9.927±0.00 N/A N/A N/A 3.231±0.90 2.967±0.00 N/A 8.037±0.00 3.223±0.00 5.402±3.29 N/A N/A 5.216±0.00 N/A
ENSG00000142444 ENST00000270502 5.924±0.00 6.317±0.00 0.584±0.00 5.919±3.06 3.963±3.60 4.669±1.96 2.863±2.30 9.491±0.00 3.607±1.08 5.464±4.15 10.970±0.00 6.038±2.61 8.416±1.49 7.477±0.67
ENST00000588807 0.827±0.00 N/A 1.489±0.00 1.151±0.00 0.739±0.20 1.888±0.00 0.611±0.00 N/A 1.972±0.00 N/A 2.696±0.00 1.271±0.00 N/A 2.887±0.00
ENST00000593162 1.613±0.00 4.213±0.00 N/A 2.119±0.00 2.725±0.00 N/A 1.121±0.00 4.264±0.00 1.872±0.00 N/A N/A 1.471±0.00 1.794±0.00 1.653±0.00
ENSG00000266936 ENST00000587831 0.046±0.00 0.538±0.00 0.565±0.00 0.052±0.00 0.288±0.06 N/A N/A 0.277±0.00 0.546±0.00 0.365±0.00 N/A 0.232±0.14 0.196±0.00 0.093±0.01
ENSG00000276757 ENST00000584303 N/A 0.941±0.00 0.897±0.00 0.227±0.00 0.503±0.00 N/A 0.310±0.00 N/A N/A N/A N/A 0.718±0.00 0.288±0.00 0.288±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000032182 ENSMUST00000034700 N/A N/A 10.801±0.00 N/A N/A N/A N/A 13.674±0.55 7.139±0.26 N/A N/A N/A 13.748±3.11 N/A
ENSMUST00000078572 20.035±2.95 45.828±2.53 16.391±1.78 N/A 21.789±2.33 28.780±3.51 N/A 18.704±2.46 15.672±4.36 26.754±3.22 13.409±0.00 32.062±11.21 21.964±5.01 N/A
ENSMUST00000180365 N/A N/A N/A N/A N/A 18.907±2.89 N/A N/A N/A N/A N/A 15.969±3.81 9.961±0.00 N/A
ENSMUSG00000032187 ENSMUST00000034707 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.069±0.00
ENSMUST00000098948 N/A 3.661±0.58 4.146±0.00 15.850±3.98 2.115±0.28 2.464±0.46 0.954±0.00 1.657±0.01 1.963±1.36 1.929±0.00 1.177±0.13 7.207±6.09 12.821±7.33 2.797±0.00
ENSMUST00000172996 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.528±0.00 N/A 9.628±5.18
ENSMUST00000174008 15.566±3.39 22.713±4.83 17.562±0.79 48.783±9.98 15.466±5.60 18.055±2.16 7.861±0.38 9.981±0.57 9.737±3.93 16.635±2.56 6.359±0.66 30.456±6.35 24.491±11.92 18.869±1.35
ENSMUSG00000048429 ENSMUST00000062125 25.351±7.85 57.779±7.73 19.041±0.36 31.126±14.51 31.654±4.47 18.958±2.63 27.593±1.58 24.108±1.13 20.719±4.63 21.884±2.14 29.042±3.23 31.598±7.76 17.970±4.22 6.466±0.00
ENSMUSG00000088478 ENSMUST00000157853 N/A N/A 12.435±0.00 N/A N/A N/A N/A N/A 3.707±0.00 N/A N/A 19.698±0.00 N/A 720.018±0.00

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