C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000041412 smarca2-001 ENSDARG00000008904 7955 + 5:46757516-46902718 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000041412
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000041412 5.020±4.44 11.815±4.04 4.687±3.07 1.091±0.00 2.396±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000643 CIL_000643_0001 CGP 5:46626544-46902718

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0004386 IEA helicase activity
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0016817 IEA hydrolase activity, acting on acid anhydrides
GO:0016818 IEA hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000025862 Smarca2-001 protein_coding Mus_musculus 0 2194
ENSMUST00000034707 Smarca4-001 protein_coding Mus_musculus 0 1670
ENSMUST00000098948 Smarca4-201 protein_coding Mus_musculus 0 1653
ENSMUST00000099537 Smarca2-002 nonsense_mediated_decay Mus_musculus 0 2004
ENSMUST00000172996 Smarca4-002 protein_coding Mus_musculus 0 1423
ENSMUST00000174008 Smarca4-003 protein_coding Mus_musculus 0 1670
ENSMUST00000175935 Smarca2-004 processed_transcript Mus_musculus 0 1129
ENSMUST00000176030 Smarca2-003 protein_coding Mus_musculus 0 2004
ENSMUST00000176769 Smarca2-005 protein_coding Mus_musculus 0 1170
ENST00000344626 SMARCA4-001 protein_coding Homo_sapiens 0 1467
ENST00000349721 SMARCA2-202 protein_coding Homo_sapiens 0 1879
ENST00000357248 SMARCA2-203 protein_coding Homo_sapiens 0 2058
ENST00000382194 SMARCA2-004 protein_coding Homo_sapiens 0 2058
ENST00000382203 SMARCA2-003 protein_coding Homo_sapiens 0 1879
ENST00000413806 SMARCA4-201 protein_coding Homo_sapiens 0 1399
ENST00000429416 SMARCA4-007 protein_coding Homo_sapiens 0 1467
ENST00000444061 SMARCA4-003 protein_coding Homo_sapiens 0 1698
ENST00000450717 SMARCA4-202 protein_coding Homo_sapiens 0 1467
ENST00000541122 SMARCA4-005 protein_coding Homo_sapiens 0 1687
ENST00000589677 SMARCA4-004 protein_coding Homo_sapiens 0 1687
ENST00000590574 SMARCA4-002 protein_coding Homo_sapiens 0 1698
ENST00000591545 SMARCA4-009 retained_intron Homo_sapiens 0 1275

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